BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0207.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction ...   586   e-168
gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction ...   410   e-116
gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas...    55   9e-09

>gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  586 bits (1510), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/320 (88%), Positives = 304/320 (95%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGNPEGTTDKPGELYGINVFKIREIVPMMDITAA 60
           MD+FQKEIDERTNLTS+NKFELLLFRLG P+G+TDKPGELYGINVFKIREIVPMMDITAA
Sbjct: 1   MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60

Query: 61  AGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIVR 120
           AGMRSPM+GMVNIRGQVMSVVDLPAVAGCK GHG NILLITEFARHTQAFAVESVEEIVR
Sbjct: 61  AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120

Query: 121 LDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPTPGS 180
           LDWSQVLPADS++ G++VTSIARLDS +DGGRLVQVLDVE ILN+VSPVKEQ+QP  PG+
Sbjct: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180

Query: 181 NELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQEHK 240
            ELK+KPG+VVLAADDSRMARALIEQCL DL LP++M TDGLQAWKKLQ+L++ A QE K
Sbjct: 181 AELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240

Query: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGANG 300
           PLTDKVAMVLTDLEMPEMDGFTLTRKIKASD YKQLPVVIHSSLTG+ANEDHVRSVGANG
Sbjct: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300

Query: 301 YVAKFSPPELAAMLRKVLPP 320
           YVAKFSPPELAAMLR+VLPP
Sbjct: 301 YVAKFSPPELAAMLRQVLPP 320


>gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  410 bits (1055), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/320 (64%), Positives = 252/320 (78%), Gaps = 5/320 (1%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLG-NPEGTTDKPGELYGINVFKIREIVPMMDITA 59
           MD FQKEIDERTNLT+SNKFELLLFRLG +P G   +  EL+GINVFKIREIVPM  +T 
Sbjct: 1   MDNFQKEIDERTNLTASNKFELLLFRLGTDPHG---ERSELFGINVFKIREIVPMPPVTK 57

Query: 60  AAGMRSPMLGMVNIRGQVMSVVDLPAVAGCKPGHGLNILLITEFARHTQAFAVESVEEIV 119
           AAG +SPMLGMVNIRGQ++SV+DLPAV GC P  GLNILL+TE+AR TQAFAVESV+EIV
Sbjct: 58  AAGTQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIV 117

Query: 120 RLDWSQVLPADSNASGNVVTSIARLDSALDGGRLVQVLDVEQILNMVSPVKEQIQPPT-P 178
           RL+WSQVL A++++ G  VTSIARLD+  D  RL QVLDVEQIL+ + P    ++  +  
Sbjct: 118 RLEWSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLE 177

Query: 179 GSNELKIKPGSVVLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQE 238
            S    I+PG+V +AADDS++AR+LIEQ L  +++PY M   G +AW+K+Q+LAREA  E
Sbjct: 178 KSASHGIRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREARAE 237

Query: 239 HKPLTDKVAMVLTDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGA 298
            +P++DK++ VLTDLEMPEMDGFTLTR IK  D  K +PV+IHSSL+G+ANEDHVRSVG 
Sbjct: 238 GRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSVGG 297

Query: 299 NGYVAKFSPPELAAMLRKVL 318
           + YVAKF   ELAA +  VL
Sbjct: 298 DAYVAKFEANELAATIYGVL 317


>gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 14/129 (10%)

Query: 191 VLAADDSRMARALIEQCLNDLKLPYVMATDGLQAWKKLQELAREAEQEHKPLTDKVAMVL 250
           +LA DDS   R ++   L         A DG+ A +K +             +    +VL
Sbjct: 5   ILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAK-------------SQTFDLVL 51

Query: 251 TDLEMPEMDGFTLTRKIKASDLYKQLPVVIHSSLTGAANEDHVRSVGANGYVAK-FSPPE 309
           TD  MP MDG TL R ++    Y ++P+++ ++      +   ++ GANG++ K F P  
Sbjct: 52  TDQNMPRMDGLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQR 111

Query: 310 LAAMLRKVL 318
           L  ++RKV+
Sbjct: 112 LTEVVRKVI 120


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 965,812
Number of extensions: 38818
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 5
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)