BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0205.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313026|ref|YP_003777118.1| signal transduction protein con... 359 e-101 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 128 3e-31 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 125 3e-30 gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709... 120 8e-29 gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014... 117 5e-28 >gi|300313026|ref|YP_003777118.1| signal transduction protein containing sensor and EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 359 bits (922), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/220 (79%), Positives = 194/220 (88%) Query: 1 VPLAEESGLILPMTDQVIAAVVEELGDTLRADRALHVAVNVAAHDIKTGRIIDVVSQTLA 60 + LAEESGLILP+TD V+ VV E+ DTLR DRALH+A+NVAA D+KTGRI++VVSQ LA Sbjct: 320 IALAEESGLILPLTDLVVDTVVREMRDTLRQDRALHIAINVAAQDMKTGRILEVVSQALA 379 Query: 61 GTDIRTEQLWMEATERGCMDIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDA 120 G+DIR EQLWMEATERGCMDIASA +TLARARE+GHSMALDDFGTGYSNLQYLQGLPMDA Sbjct: 380 GSDIRPEQLWMEATERGCMDIASASLTLARAREMGHSMALDDFGTGYSNLQYLQGLPMDA 439 Query: 121 LKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLFIVAEGVETLEQAAYLGQHGVDFAQGW 180 LKIDKSFVSTIGTGAATSAVIDHIIAMAKSL L+IVAEGVETLEQAAYL + GVDFAQGW Sbjct: 440 LKIDKSFVSTIGTGAATSAVIDHIIAMAKSLKLYIVAEGVETLEQAAYLAERGVDFAQGW 499 Query: 181 LFAKPLPAGEFIDFYRATLADYGTGPESIRSDRTDLASTP 220 LF++PLP EF+ FY ATLADYG+GPE IR + +P Sbjct: 500 LFSRPLPVEEFVAFYCATLADYGSGPEIIRGPQPASTDSP 539 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 2/196 (1%) Query: 3 LAEESGLILPMTDQVIAAVVEELGDTLRADRA-LHVAVNVAAHDIKTGRIIDVVSQTLAG 61 LAEE+GLILP+ V+ A + A + V+VN++ ++ ++ L Sbjct: 747 LAEETGLILPIGAWVLRAACTQCRQWQLGGYADISVSVNLSVGQFLQKDLVSSIADVLED 806 Query: 62 TDIRTEQLWMEATERGCM-DIASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMDA 120 T + E L +E TE M D+ A LA ++LG +++DDFGTGYS+L YL+ P+D Sbjct: 807 TGLPPESLELELTESLMMTDVEHAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDV 866 Query: 121 LKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLFIVAEGVETLEQAAYLGQHGVDFAQGW 180 LKID+SFV I A +A+ II++A+ L L ++AEGVET EQ YL +G D QG+ Sbjct: 867 LKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGY 926 Query: 181 LFAKPLPAGEFIDFYR 196 LF+ P+PA +F R Sbjct: 927 LFSPPVPADKFEQILR 942 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/193 (39%), Positives = 113/193 (58%), Gaps = 3/193 (1%) Query: 1 VPLAEESGLILPMTDQVIAAVVEELGDTLRAD-RALHVAVNVAAHDIKTGRIIDVVSQTL 59 +P AEE+GLI+P+ + V+ + +A + VAVN++ + + D V+ L Sbjct: 493 IPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQLNQS-LPDFVAGVL 551 Query: 60 AGTDIRTEQLWMEATERGCMDIASARV-TLARARELGHSMALDDFGTGYSNLQYLQGLPM 118 A + + L +E TE M A V TL + LG +++DDFGTGYS+L YL+ P+ Sbjct: 552 AQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPV 611 Query: 119 DALKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLFIVAEGVETLEQAAYLGQHGVDFAQ 178 DALKIDKSFV I A ++A++ II++A LNL ++AEGVE EQ A+L ++ D Q Sbjct: 612 DALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQ 671 Query: 179 GWLFAKPLPAGEF 191 G+ F KP+ F Sbjct: 672 GYYFGKPMEVAVF 684 >gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1] Length = 598 Score = 120 bits (302), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 108/192 (56%), Gaps = 1/192 (0%) Query: 1 VPLAEESGLILPMTDQVIAAVVEELGDTLRADRALHVAVNVAAHDIKTGRIIDVVSQTLA 60 +PLAE++G I +T V+ VV ++ L++ RAL VA N +A D + + ++++Q L Sbjct: 399 IPLAEKTGQIRQVTAWVLRQVVAQVARWLKSGRALPVAFNASARDFDSDELRELLAQQLK 458 Query: 61 GTDIRTEQLWMEATERGCMD-IASARVTLARARELGHSMALDDFGTGYSNLQYLQGLPMD 119 + + +E TE + R + RELG +A+DDFG G+SNL YL+ +P D Sbjct: 459 LHKVPPALIEIEFTEHAMANHPQQVRQRVQALRELGVKVAIDDFGAGFSNLSYLKNIPAD 518 Query: 120 ALKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLFIVAEGVETLEQAAYLGQHGVDFAQG 179 +KID+SF+ + A ++ I+ +A +L +VAEG+E+ A L G D+ QG Sbjct: 519 TMKIDRSFIHRLLDDEADQLIVPSILHLAHNLGFSVVAEGLESERTATLLRHLGCDYGQG 578 Query: 180 WLFAKPLPAGEF 191 + A+P+P E Sbjct: 579 YAIARPMPLAEL 590 >gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspirillum seropedicae SmR1] Length = 726 Score = 117 bits (294), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 3/197 (1%) Query: 1 VPLAEESGLILPMTDQVIAAVVEELGDTLRAD--RALHVAVNVAAHDIKTGRIIDVVSQT 58 + LAE+ GL+ + QV+ + +L + R R L VA+NV+A + K + + Sbjct: 522 ISLAEDMGLMDEIGRQVLHRICTDLENWQREGLARDLVVAINVSAQEFKVDNFVYRFREI 581 Query: 59 LAGTDIRTEQLWMEATERGCMDIASARVTLARA-RELGHSMALDDFGTGYSNLQYLQGLP 117 + + + + +E TE +D +T +A R S++LDDFGTGYS+L YL P Sbjct: 582 MREHHVPSHSVKVELTESMMVDHIEDVITKMQALRSNEVSISLDDFGTGYSSLSYLGRFP 641 Query: 118 MDALKIDKSFVSTIGTGAATSAVIDHIIAMAKSLNLFIVAEGVETLEQAAYLGQHGVDFA 177 +D +KID++FV + AA +++I II + +SLNL I+AEGVET +Q +L G Sbjct: 642 IDQIKIDQTFVREMQNDAAMASIIRSIIMLGQSLNLSIIAEGVETEQQRDFLHAQGCLLY 701 Query: 178 QGWLFAKPLPAGEFIDF 194 QG+ ++KP+P +F D Sbjct: 702 QGYWYSKPIPGEQFADL 718 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 700,880 Number of extensions: 28385 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 18 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)