BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0203.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans...   199   1e-52
gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans...   193   1e-50
gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans...   130   6e-32
gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor trans...    91   6e-20

>gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  199 bits (506), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 106/137 (77%), Gaps = 6/137 (4%)

Query: 1   MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60
           MR NLP+T  ER +E   SIVSKTD++G I YVNP FI ISGF EEELIGAPQNIVRHP+
Sbjct: 1   MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60

Query: 61  MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120
           MP  AFAD+W+TLK GLPW GLVKNRCKNGD+YWV+ANVTP+ E G+  GYMSVRT+P+R
Sbjct: 61  MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120

Query: 121 TXTRSP------FSKGR 131
              ++       FS G+
Sbjct: 121 EQVQAAEAAYRKFSAGQ 137


>gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  193 bits (490), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 98/120 (81%)

Query: 1   MRLNLPVTQQEREIEAYASIVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPD 60
           MR+N+PVT QER +    +IVSKTD+KG ITYVNP FI ISGF E EL+GAPQN++RHPD
Sbjct: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60

Query: 61  MPELAFADLWSTLKAGLPWTGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTR 120
           MP  AFAD+W+T+K G PWTGLVKNR KNGD YWV+ANVTPI E G+  GYMSVRTKP R
Sbjct: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120


>gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 493

 Score =  130 bits (328), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 76/112 (67%)

Query: 21  VSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPDMPELAFADLWSTLKAGLPWT 80
           +S TD    +TY N +F+ +SGF  E+LIG P NIVRHPDMP  AFAD+W+TL+ G  WT
Sbjct: 1   MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60

Query: 81  GLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTRTXTRSPFSKGRR 132
            +VKNR  +G  YWV+ANVTPI   G  TG++SVRT+P     R+  +  RR
Sbjct: 61  AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRR 112


>gi|300310662|ref|YP_003774754.1| aerotaxis sensor receptor
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 536

 Score = 90.9 bits (224), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 2/115 (1%)

Query: 20  IVSKTDIKGRITYVNPTFIHISGFTEEELIGAPQNIVRHPDMPELAFADLWSTLKAGLPW 79
           ++++TDI+GR+ YVN  F+  SG+  +EL+G P +++  PD P    ADLW T+KA   W
Sbjct: 34  LITRTDIEGRMVYVNAAFVRRSGYAADELLGQPASMMYAPDTPPELGADLWRTVKARGAW 93

Query: 80  TGLVKNRCKNGDFYWVKANVTPIWERGKCTGYMSVRTKPTRTXTR--SPFSKGRR 132
           TG++++R K+G  +W +A +T     G   G+ +VRT+      R    F+  RR
Sbjct: 94  TGVMRHRGKDGRCFWARATITRTMVDGAHVGHTTVRTRAADHEVRRMRAFTAARR 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 639,507
Number of extensions: 25951
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)