BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0198.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313029|ref|YP_003777121.1| two component hybrid sensor his...   430   e-122
gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [...    64   2e-11

>gi|300313029|ref|YP_003777121.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/311 (68%), Positives = 249/311 (80%), Gaps = 5/311 (1%)

Query: 1   MTRITRNTCLFLLIAFSLLLA--XLWFYF---EVRDSLALDSRWIRDDIESLLRRYEHGL 55
           MTR+TRNT +FLLI    +LA      Y    E+ DSLA+DSRWI DDIESLLRRYEHGL
Sbjct: 22  MTRVTRNTVVFLLITLLFMLAGAATVRYLNERELHDSLAVDSRWIGDDIESLLRRYEHGL 81

Query: 56  RGTRGAILAIGADDLSREKLLRYMDSRDLAQEFPWAGGFGFIRHVPLAALPAYEKKMRED 115
           RG RGAILAIG   L+RE+LLRYMDSRDLA EFPWAGGFGFIRHVPL+A  AYE+++R+ 
Sbjct: 82  RGERGAILAIGEHALTRERLLRYMDSRDLATEFPWAGGFGFIRHVPLSARAAYEQQVRQG 141

Query: 116 HLLFSGIRQLADNPGDRYVIEYIEPLAPNRPALGLDIASSPERRSAADHAMLTGRAELTT 175
            +LF  I QLA+NPG+ YVIEYIEP+  NR ALGLDIASS  RRSAADHAMLTGRAELT 
Sbjct: 142 RMLFPSITQLAENPGELYVIEYIEPIEANRKALGLDIASSQARRSAADHAMLTGRAELTP 201

Query: 176 PIRLVQKEQRTANAYLFLLPIYAGSVTPPTMEQRQERILGWAYAPLSVHDILSELSRRWN 235
           PI LVQK+  +ANAYLFLLPIYAGSVTPPT+ +RQE+I+GWAYAPLSVHDI+SELSRRW 
Sbjct: 202 PIHLVQKDGASANAYLFLLPIYAGSVTPPTLHERQEKIIGWAYAPLSVHDIISELSRRWK 261

Query: 236 MHSLEILVEDVASNTTAVELFRSGGFDQIEDAVSLQTAVPLYGRAWKLSIRAAPEYAQAH 295
            H+LE+L++D A++   VELFRS GFD +     L +A+ LYGR WKL +R + +Y Q H
Sbjct: 262 THALEVLIKDAAADGDNVELFRSDGFDALAQDSGLDSALSLYGRTWKLQLRPSTDYRQTH 321

Query: 296 QFISDRATLLS 306
           QF+SDRA LLS
Sbjct: 322 QFVSDRAMLLS 332


>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 10/273 (3%)

Query: 44  IESLLRRYEHGLRGTRGAILAIGADDLSREKLLRYMDSRDLAQEFPWAGGFGFIRHVPLA 103
           IE  +  YE  L G +G + A GA D  R +   Y+ + +L   F           VP A
Sbjct: 51  IEQRMASYEQMLHGVQGLVAATGAID--RSQFRDYVQALNLDANFSGIQAIAVEEWVPAA 108

Query: 104 ALPAYEKKMREDHLLFSGIRQLADNPGDRYVIEYI-EP-LAPNRPALGLDIASSPERRSA 161
           ALPA+  +M E   L  G +         Y    + EP +  NR   G D  S P RRSA
Sbjct: 109 ALPAHLARM-ERQGLEGGYQIRPAGERSAYAPTVLREPYVGRNRTPFGFDQWSDPVRRSA 167

Query: 162 ADHAMLTGRAELTTPIRLVQKEQRTANAYLFLLPIYAGSVTPPTMEQRQERILGWAYAPL 221
            + A  +G A ++  + ++  + +    ++  LP+Y     P T+ QR+  ++GW +A  
Sbjct: 168 MEKARDSGMATISGKVEVLAADGQRYPTFMMYLPLYERGKPPTTIAQRRASLVGWVHATF 227

Query: 222 SVHDILSELSRRWNMHSLEILVEDVASNTTAVELFRSGGFDQIEDAVSLQTA--VPLYGR 279
            + D+++ L    N H++   + D    T    L++S   ++   A  L     V +   
Sbjct: 228 RMSDVIASLYGE-NSHTIVFSLYDGVQATPQALLYQSRQHEEAPQATRLSADEYVVVGNH 286

Query: 280 AWKLSIRAAPEYAQAHQFISDRATLLSSITLAM 312
            W L++R    +    QF  +   L+++  +AM
Sbjct: 287 NWTLTLRTNAAFHA--QFGRNAEPLIATTGIAM 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 974,023
Number of extensions: 40798
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)