BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0194.p (211 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313031|ref|YP_003777123.1| two component response regulato... 265 3e-72 gi|300313791|ref|YP_003777883.1| response regulator protein [Her... 93 2e-20 gi|300310669|ref|YP_003774761.1| two component response regulato... 71 5e-14 gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport tran... 58 6e-10 >gi|300313031|ref|YP_003777123.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 265 bits (676), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 144/211 (68%), Positives = 159/211 (75%), Gaps = 16/211 (7%) Query: 1 MTTAHLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQN 60 MT AHLAHIVGG+DS GGPL RLLE AGFHVAHH SADQFL+H T T GGLVL V+M+N Sbjct: 1 MTNAHLAHIVGGDDSLGGPLGRLLEEAGFHVAHHRSADQFLEHATATGPGGLVLAVNMRN 60 Query: 61 LDAPRLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVR 120 +DAP+LRSLLDE++ G PLIVITG P A+P + A +P V Sbjct: 61 MDAPQLRSLLDEKKEGIPLIVITGNQPGAAP----------------LGQSSAQQEPEVA 104 Query: 121 QQLVEAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGT 180 QQLV AFR ALMP+DES P +Q++ H RL TLTRREREVL LVKGRLNKQIAAELGT Sbjct: 105 QQLVAAFREALMPYDESAPHQQQRRIHQARLATLTRREREVLMLLVKGRLNKQIAAELGT 164 Query: 181 SERTVKAHRQQVMRKMNAGSLAALVAAMTRY 211 SERTVKAHRQQVMRKM AGSLA LVAAMTRY Sbjct: 165 SERTVKAHRQQVMRKMYAGSLAELVAAMTRY 195 >gi|300313791|ref|YP_003777883.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 105/206 (50%), Gaps = 17/206 (8%) Query: 8 HIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQNLDAPRLR 67 +V ++ L+RLL +AG+ SAD+FLQ L+L++ M D + Sbjct: 6 FVVDDDNMVRTALLRLLASAGYAAHGFASADEFLQARLPAVPCCLLLDMKMPGSDGFEVV 65 Query: 68 SLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVRQQLVEAF 127 L+ R P+I I+G YG + M A + T+P+ ++L+ A Sbjct: 66 RRLERRGDAIPVIFISG-----------YGTIPTTVQAMKAGAHEFLTKPIQDERLLGAV 114 Query: 128 RGALMPFDESGPQMRQQQEH---HQRLKTLTRREREVLERLVKGRLNKQIAAELGTSERT 184 AL + Q++ + EH RL+TLT REREVLE + G LNKQIA ELG SE T Sbjct: 115 EEALQIAER---QLQSRTEHAACTSRLETLTPREREVLELAIGGLLNKQIATELGISEIT 171 Query: 185 VKAHRQQVMRKMNAGSLAALVAAMTR 210 VK H+++VM KM +LA LV A R Sbjct: 172 VKVHKRRVMDKMQTKTLADLVRAAER 197 >gi|300310669|ref|YP_003774761.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 214 Score = 71.2 bits (173), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 11/204 (5%) Query: 2 TTAHLAHIVGGEDSHGGPLVRLLEAAGFHVAHHPSADQFLQHTTGTARGGLVLEVHMQNL 61 T + +IV +++ L LL + + FL+ + L+L+V M + Sbjct: 4 TNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMPEI 63 Query: 62 DAPRLRSLLDERELGRPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVRQ 121 +L+ L E P+I ++G +G R + A D +P Q Sbjct: 64 SGFQLQDRLKEIGADIPVIFVSG-----------HGDIPMSVRALHNGAVDFLEKPYNSQ 112 Query: 122 QLVEAFRGALMPFDESGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGTS 181 Q++E + L + ++Q+ RLKTLT RERE+LE+++ G+ +K IA EL S Sbjct: 113 QMLERIQMTLKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNIS 172 Query: 182 ERTVKAHRQQVMRKMNAGSLAALV 205 +TV HR V K+ S A LV Sbjct: 173 VKTVDVHRASVKDKLGCQSTATLV 196 >gi|300310176|ref|YP_003774268.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 77 RPLIVITGAPPAASPEDKRYGPHDPGQRLMSVPAGDAGTQPMVRQQLVEAFRGALMPFDE 136 RP+I +TG +G ++ A D +P QL++ AL Sbjct: 79 RPVIFLTG-----------HGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEALASSRA 127 Query: 137 SGPQMRQQQEHHQRLKTLTRREREVLERLVKGRLNKQIAAELGTSERTVKAHRQQVMRKM 196 G + Q RL L+ REREVL+ ++ G++NK IA ELG S RTV+ HR + KM Sbjct: 128 GGAEDAVQS----RLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIFDKM 183 Query: 197 N 197 N Sbjct: 184 N 184 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 662,915 Number of extensions: 27670 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 5 Length of query: 211 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 130 Effective length of database: 1,236,335 Effective search space: 160723550 Effective search space used: 160723550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)