BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0190.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o...   692   0.0  
gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911...   100   3e-22

>gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of
           sigma subunit [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/413 (81%), Positives = 362/413 (87%), Gaps = 5/413 (1%)

Query: 1   LFQPTAGALAVQVPVVQFDENNATVLEIFGQHKELVSLPVVERQRPIGLISRHIFMSQMS 60
           LFQPTAGALAVQVPVVQFD+NNA VLEIF QHKELVSLPVVE+QRPIGLISRHIFMSQMS
Sbjct: 15  LFQPTAGALAVQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMS 74

Query: 61  KPYHRELYERKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQGQLAGL 120
           KPYHRELYERKSCIAFMDKDPLIV+ADTPIETLGALAVASGDKTLADGF+IV+QGQL GL
Sbjct: 75  KPYHRELYERKSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGL 134

Query: 121 GAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSASRAAMTEALADACLVWEPRDVV 180
           G+GLALMRELV +Q EKNRQVMQSIDYASVIQRAMLSASRAAM  AL DACL+WEPRDVV
Sbjct: 135 GSGLALMRELVDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAALQDACLIWEPRDVV 194

Query: 181 GGDFYHFEPHPGGWFAAVADCTGHGVPGAFLTLIASSSLKQALELHGPHDPARLMREVNR 240
           GGDFYHFE HP GWFAAVADCTGHGVPGAFLTLIASS+LKQALELHGP DPARLM+EVNR
Sbjct: 195 GGDFYHFEEHPQGWFAAVADCTGHGVPGAFLTLIASSALKQALELHGPRDPARLMQEVNR 254

Query: 241 SMKRVLGQHGQSGKPSESDDGMDACFFWFDSATRTLTSSSAKMPLFLLVADGTEVLTIEG 300
           SMKRVLGQHG   KPSESDDGMDACFFWFDSA+RTLT ++AKM LFLL A   +V T+EG
Sbjct: 255 SMKRVLGQHGAQDKPSESDDGMDACFFWFDSASRTLTCANAKMALFLLPAADEQVQTVEG 314

Query: 301 KRVGLGYVDTPDDMQWDNHSQQLAPGSMIFVCTDGVIDQIGGPKHIAFGKQRLRRTLLEH 360
           KRVGLGYVDTP+DMQW NH   +A G M+FVCTDG+IDQIGG KHIAFGKQRLRRTLLE+
Sbjct: 315 KRVGLGYVDTPEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHIAFGKQRLRRTLLEY 374

Query: 361 GSLAMPALGRVVMDIHGHYQGTQRRRDDICFFGVRLDAAQPGSQQDSQHGTHA 413
             L +  LGR +MD+H  YQG QRRRDDI FFG R+     G    SQH   A
Sbjct: 375 RRLPLAELGRTLMDVHRDYQGAQRRRDDISFFGARI-----GGVFSSQHEVQA 422


>gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 79/135 (58%)

Query: 5   TAGALAVQVPVVQFDENNATVLEIFGQHKELVSLPVVERQRPIGLISRHIFMSQMSKPYH 64
           T   L  +   V  + +N TV ++F    +L +LPVV    PIGLI+R+  + + ++ Y 
Sbjct: 277 TVFKLLRETRYVSPEVSNDTVYDMFVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYG 336

Query: 65  RELYERKSCIAFMDKDPLIVEADTPIETLGALAVASGDKTLADGFIIVDQGQLAGLGAGL 124
           RELY +KSC  FMD +P++ E  T ++ L  L V +    L++GFII D+GQ  GLG G 
Sbjct: 337 RELYGKKSCAFFMDPNPILTEQSTSLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGH 396

Query: 125 ALMRELVAMQEEKNR 139
            L+RE+  MQ +  R
Sbjct: 397 DLLREITQMQIDAAR 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,318,369
Number of extensions: 54799
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)