BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0189.p
         (224 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313036|ref|YP_003777128.1| hypothetical protein Hsero_3742...   364   e-102

>gi|300313036|ref|YP_003777128.1| hypothetical protein Hsero_3742
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  364 bits (935), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/224 (76%), Positives = 193/224 (86%)

Query: 1   MDSTLTASQIDNIIGALSATRLATFQGAAGFSANTHPIDKYSWHALMSAAFFASLHVCEV 60
           M + LT +QI NI  ALSA RLATF+ AAGFSA T  ++KYSWHALMSAAFFASLHVCEV
Sbjct: 1   MSNVLTIAQIHNITCALSAARLATFEDAAGFSATTCAVEKYSWHALMSAAFFASLHVCEV 60

Query: 61  TVRNAVDSALCSTYGKDWPWNRNFERSLPNPKGPHFQPQSELMRARGKMQSGATGKVIAE 120
           ++RNAVD+ALC+ YG+DWPWNRNFERSL NP GPHFQP++EL RAR KM  GATGKVIAE
Sbjct: 61  SMRNAVDNALCAVYGQDWPWNRNFERSLANPGGPHFQPRTELQRARAKMPIGATGKVIAE 120

Query: 121 LRFAFWCHLFTVRYQGRIWDSQILHCFPNFPHPVRPAQARQVIHAELERLRRFRNRIAHH 180
           L+FAFWCH+FT RYQGRIWDSQ+L CFP+FPHP +PA  RQ IHAELE LRRFRNRIAHH
Sbjct: 121 LKFAFWCHMFTARYQGRIWDSQVLPCFPHFPHPTQPALVRQTIHAELECLRRFRNRIAHH 180

Query: 181 EPILADPLAHLQSSIQSLLHWRCADLAGWHAQWETVTRHLQCKP 224
           EPIL+DPL HLQ+SIQSL+HWRC DLA WH  WETVTR+L+ KP
Sbjct: 181 EPILSDPLPHLQASIQSLIHWRCPDLAHWHGTWETVTRYLRIKP 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.134    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,699
Number of extensions: 27964
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,231,600
Effective search space: 174887200
Effective search space used: 174887200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)