BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0184.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745...   360   e-101

>gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745
           [Herbaspirillum seropedicae SmR1]
          Length = 826

 Score =  360 bits (925), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/204 (87%), Positives = 190/204 (93%)

Query: 1   VIARRQGMEIMGYEQGPDYAVYGGSYPGGAGRGIGMYGNEDKPLPDNPQARAQADLPGPL 60
           +IARRQGMEIMGYEQGPD+AVYGGSYPGGAGRG GMY +E +P+PDNPQARAQADLPGPL
Sbjct: 622 LIARRQGMEIMGYEQGPDFAVYGGSYPGGAGRGTGMYADESRPVPDNPQARAQADLPGPL 681

Query: 61  VTDEERRRYAASEAKPYKRFHYRDIAADYIMKSADALPARSQAFAAVLCQGVNFVYYDQP 120
           VTD ER+RYAASEAKPYKRFHYRD+AADY+MK+ADALP RSQAFAAVLCQGVNFVYYDQP
Sbjct: 682 VTDGERQRYAASEAKPYKRFHYRDVAADYVMKAADALPPRSQAFAAVLCQGVNFVYYDQP 741

Query: 121 RAEQLYLRYVKEGAAVPFSADFGQNCVEPDFAAAARFPYVQAWRSTRRWVSQHRALSAAL 180
           RAEQLY RYVKEGAAVPFSADFGQNCVEPDFAAAARFPYVQAWR  R WV++HRA+SAAL
Sbjct: 742 RAEQLYRRYVKEGAAVPFSADFGQNCVEPDFAAAARFPYVQAWRGARGWVARHRAVSAAL 801

Query: 181 LLGAAVGAGFGVAQWRRRRRAAKT 204
           LL A VG GFGVAQWRRRRR  KT
Sbjct: 802 LLAAMVGGGFGVAQWRRRRRVNKT 825


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,532
Number of extensions: 20766
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)