BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0183.p
         (641 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745...   883   0.0  

>gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745
           [Herbaspirillum seropedicae SmR1]
          Length = 826

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/587 (79%), Positives = 512/587 (87%), Gaps = 3/587 (0%)

Query: 22  LGRMTKIACAASSLLVLGAATVVACGPDFPLQLLDDRAGTLSNTPANSFAWEAAHLVTPA 81
           +GRM K+A AAS LLVLGAATVVACGPDFP+QLLDDR G L NTPANSFAWEAAHLVTPA
Sbjct: 9   MGRMKKLAYAASGLLVLGAATVVACGPDFPMQLLDDRVGALRNTPANSFAWEAAHLVTPA 68

Query: 82  DKLQADERSGYEQAAGQPDDPRSLRMIEKGQLEGAQWAALQAMRAAPDGESAYAAGAALP 141
           DKLQADE SGYEQA GQPDDPRSLRMIEKG+L+ AQW ALQAMRAA DGESAYAAGAALP
Sbjct: 69  DKLQADEGSGYEQAVGQPDDPRSLRMIEKGRLDAAQWTALQAMRAAADGESAYAAGAALP 128

Query: 142 PAIRLYTAGAQDFRANALAAARQRFEAVLALPPQQASERAVWAAFMLGRLHAIEERRAEA 201
           PAIRLYTA AQDFRANALAAARQRFEAVLALPPQQASERAVWAA+MLGRLHAIE RR +A
Sbjct: 129 PAIRLYTAAAQDFRANALAAARQRFEAVLALPPQQASERAVWAAYMLGRLHAIEGRREQA 188

Query: 202 IASFTKARALAVSGAPDPLGLAVASYGEQARLMLSGQSGPCNWSDFNEGRDCGETIPPAD 261
           IASFTKARALAV+GA DP+GLAVASYGEQARLML G++G CNWSDFNEGRDC ++I PAD
Sbjct: 189 IASFTKARALAVAGAADPMGLAVASYGEQARLMLVGEAGSCNWSDFNEGRDCAQSIAPAD 248

Query: 262 FKQAIRLYAEQAARGSYNAQDSLTALAAWSLGHADISAALIDDPVAQRLLVAYALARVGD 321
           FKQAI LYAEQAARGS +AQ SL ALAAW+LG+A+ SAALIDD VAQRLLVAYALAR+GD
Sbjct: 249 FKQAIHLYAEQAARGSASAQSSLEALAAWNLGNAERSAALIDDAVAQRLLVAYALARLGD 308

Query: 322 IAEGSGNGDSYYDPSAPNSGSSGYPDAARSAKVKPNSVLVTLVDALKRRGLEKIEGADRV 381
           + EG   G   YDP+AP SGSSGY DAARS  +KP+ +LV L+DALKRRGLEKI+GADRV
Sbjct: 309 VGEGPQAGGYDYDPTAPTSGSSGYADAARSDTLKPSPILVNLIDALKRRGLEKIDGADRV 368

Query: 382 AALAYRTGRYDLAATLANRQETALSWWVRAKLALRKGDTAAAVQAYARAAQGFPRNDASL 441
           AALAYRTGRY+LAA+LA RQ+TAL+WWVRAKLALR+GD  AAVQAY RA Q FPRNDASL
Sbjct: 369 AALAYRTGRYELAASLAGRQDTALAWWVRAKLALRRGDNEAAVQAYTRAVQAFPRNDASL 428

Query: 442 DPSNANLLMGEQGVLTLSRGQYVEALTQFHQAASDSARQSRGGYYGDYAYANDMAYVAER 501
           +P NANLLMGEQGVLTLSRGQYVEAL QFH+AAS++ARQS  GY+G Y Y ND+AYVAER
Sbjct: 429 EPGNANLLMGEQGVLTLSRGQYVEALAQFHRAASETARQSGNGYFGMYGYYNDLAYVAER 488

Query: 502 VLTVDELKTYVDAHAPASPMPSAQALAKEM--QRQGRLRIWEAASRLSPPTLEDNLRLLL 559
           VLTVDELKTYVDAHAPASPMP+ +A+AK +  Q+  + R W AA  LS  T+EDNLR LL
Sbjct: 489 VLTVDELKTYVDAHAPASPMPAPEAVAKAVQQQQGRQSRRW-AAVGLSAITVEDNLRQLL 547

Query: 560 AQRLVREGRVDEALAYFPDDRDERFVYHELDQNYQETGRIWRLRAKA 606
           A+RLVREGRV++ALAYFPD+RDERFV    D   +ET   WRLRAKA
Sbjct: 548 ARRLVREGRVEDALAYFPDERDERFVQSSYDAEGRETPDAWRLRAKA 594


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,824,410
Number of extensions: 71688
Number of successful extensions: 283
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 550
Effective length of database: 1,188,985
Effective search space: 653941750
Effective search space used: 653941750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)