BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0182.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746...   496   e-141

>gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  496 bits (1276), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/435 (64%), Positives = 314/435 (72%), Gaps = 45/435 (10%)

Query: 1   MPLAFLPARFARRSCLCLIWMLLAVLLAACSRHPLPAEKLSQDVYIWQRQWTPSLRTALS 60
           MP AFLP R  RR C  L WMLLA+LLAACSR P P  +L QD YIWQRQWTP+LRTALS
Sbjct: 23  MPFAFLPERSCRRICRGLSWMLLALLLAACSRAPAPGARLPQDAYIWQRQWTPALRTALS 82

Query: 61  ASNAQVARWHVLAAELGASGRWIDITPDAEALANTGRPLLMTVRINGQLARFDAAAIQDQ 120
           AS+A VARWHVLAAELGASGRWIDI PD EALANTGRPLLMTVRINGQLAR DAAAIQD 
Sbjct: 83  ASHAHVARWHVLAAELGASGRWIDIDPDVEALANTGRPLLMTVRINGQLARLDAAAIQDH 142

Query: 121 -----------DXRPAT-----GCAGNRL----RLRHGAPARIHRL----PAQPQGPDCP 156
                        +PA       CA  RL           AR+  L     A P     P
Sbjct: 143 LLERLSAWRRRGLQPAALEIDYDCATARLPEYIAFLRSLKARVAPLDLAVTALPTWLSSP 202

Query: 157 DGSDRDGLADLAGQPAAVILSNXTLQVHAVLDPRLGLFDGERARDWMRQYAAQTRRPWHV 216
             +    +AD             TLQVHAVLDPRLGLFD   A+DW+ QYA +TRRPWHV
Sbjct: 203 QLASLLAVAD-----------ESTLQVHAVLDPRLGLFDARLAQDWLHQYAQRTRRPWHV 251

Query: 217 ALPAYGSRVSWDSQGRIAAVESERPLLTGGLGRELMAEPQVMARFVAEVEAAPPPGLAGL 276
           ALPAYG+RVSWD+QGRIAAVESERPLL GGLG ELM +PQVMARFVA+++A+PP G+AG+
Sbjct: 252 ALPAYGARVSWDAQGRIAAVESERPLLAGGLGNELMVDPQVMARFVAQLQASPPAGMAGI 311

Query: 277 IWFRLPTGDDRRAWSLSTWLAVLERKPLKGGLAVQLVAGQGNDAPADIRIDNAGNADAPL 336
            WFRLPTGDDRRAWSLSTW+AVLE KPLK GL VQLVAGQG + P+DIR++N GNAD  L
Sbjct: 312 TWFRLPTGDDRRAWSLSTWIAVLEGKPLKPGLQVQLVAGQGGNTPSDIRLNNEGNADVSL 371

Query: 337 PLRVRVNLAPRDAASPGNVCSGDGINGYTLESDARGDA----------AGSSRTIGWLRC 386
           PLRVR+ +   DAAS GNVCSGDGINGYTLE+DA+G            AG+SRTIGWLRC
Sbjct: 372 PLRVRIKVRAGDAASAGNVCSGDGINGYTLENDAQGRYLRLGQAGLLRAGASRTIGWLRC 431

Query: 387 ADGTPAPELTLEMGS 401
           A+G  AP++TLEMGS
Sbjct: 432 AEGGAAPDITLEMGS 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,519,980
Number of extensions: 73680
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)