BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0179.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313043|ref|YP_003777135.1| two component response regulato... 402 e-114 gi|300309981|ref|YP_003774073.1| two component response regulato... 82 5e-17 gi|300313069|ref|YP_003777161.1| two component response regulato... 77 8e-16 gi|300313680|ref|YP_003777772.1| two component response regulato... 75 3e-15 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 72 3e-14 >gi|300313043|ref|YP_003777135.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 402 bits (1034), Expect = e-114, Method: Compositional matrix adjust. Identities = 190/216 (87%), Positives = 206/216 (95%) Query: 1 VGELGYEISVCSALGQARDILKSRQPDILLSDIGLPDGSLLPELASLRQNFPSMGIIILT 60 +G+LGYE SVC+ LGQAR++L+ RQPDILL+D+GLPDGSLLPELASLRQ+FPSMGI++LT Sbjct: 20 MGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLLPELASLRQHFPSMGIVVLT 79 Query: 61 AATRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARRMKTAPHQSSPQSEKWAFNRRS 120 AA R EER+RCMSDGADYYL +PVKLEEVSATLTALARRMKT PHQSSPQSEKWAFNRRS Sbjct: 80 AAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMKTVPHQSSPQSEKWAFNRRS 139 Query: 121 GRLSSNGSVALQFTDKESTALAALLQSPNYPVSHAQLFDLLRSGGEEYDAHRIDALIYRV 180 GRLSSNG ALQFTDKESTALAALLQSPNYPVSH QLFDLLRSGGEEYDAHRIDALIYRV Sbjct: 140 GRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLLRSGGEEYDAHRIDALIYRV 199 Query: 181 RQKLRSLEEAPMQIRNIYGEGFLMLRRSSAVDIVLE 216 RQKLRSLEE+PMQIRNIYGEGFLMLRR+S+VDIVLE Sbjct: 200 RQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLE 235 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 81.6 bits (200), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 5/200 (2%) Query: 5 GYEISVCSALGQARDILKSRQPDILLSDIGLPDGSLLPELASLRQNFPSMGIIILTAATR 64 GY +A L ++ D+L+ D+GLP S L L LR + ++ILTAA Sbjct: 24 GYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEVLRRLRARNSRLPVLILTAADS 83 Query: 65 SEERVRCMSDGADYYLVKPVKLEEVSATLTALARRMKTAPHQSSPQSEKWAFNRRSGRLS 124 E+RV+ + GAD Y+ KP L E+ A + AL RR + + +++ + GR++ Sbjct: 84 VEQRVQGLDLGADDYMAKPFALSELEARVRALTRR-GAGGGPTVIRHGPLSYD-QVGRIA 141 Query: 125 SNGSVALQFTDKESTALAALLQSPNYPVSHAQLFDLLRSGGEEYDAHRIDALIYRVRQKL 184 G L+ + +E L LLQ VS QL D L GEE + I+ ++R+R+K Sbjct: 142 YIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKK- 200 Query: 185 RSLEEAPMQIRNIYGEGFLM 204 +E ++I + G G+ + Sbjct: 201 --IEVGGVRIATVRGLGYCL 218 >gi|300313069|ref|YP_003777161.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 77.4 bits (189), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 14/188 (7%) Query: 23 SRQPDILLSDIGLPDGSLLPELASLRQNFPSMGIIILTAATRSEERVRCMSDGADYYLVK 82 +R+PD+++ D+GLPDG ++ +R N+ S+ I+IL+A T+ E+V + GAD YLVK Sbjct: 47 TRKPDLIILDLGLPDGDGKQVISEIR-NWSSVPIVILSARTQESEKVEALDAGADDYLVK 105 Query: 83 PVKLEEVSATLTALARRMKTAPHQSSPQSEKWAFNRRSG--------RLSSNGSVALQFT 134 P + E+ A + A RR H + + + + R G R S AL T Sbjct: 106 PFGMPELLARMRAQLRR-----HARASSAGQSSGRYRLGDVVVDLPARSVSRHGEALHLT 160 Query: 135 DKESTALAALLQSPNYPVSHAQLFDLLRSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQI 194 E L+ LL+ ++H QL D H + + R+RQKL P+ I Sbjct: 161 QIEYRLLSTLLRDAGRVITHRQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHI 220 Query: 195 RNIYGEGF 202 G G+ Sbjct: 221 LTEIGVGY 228 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 75.5 bits (184), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 8/191 (4%) Query: 15 GQARDI-LKSRQPDILLSDIGLPDGSLLPELASLRQNFPSMGIIILTAATRSEERVRCMS 73 G++ D+ L++ +LL D+GLP L L +LR+ ++ ++I TA +RV + Sbjct: 33 GKSADVALRTEDYAMLLLDLGLPQKDGLAVLRTLRERGNAIPVLITTARDAVADRVAGLD 92 Query: 74 DGADYYLVKPVKLEEVSATLTALARRMKTAPHQSSPQSEKWAFNRRSGRLSSNGSVALQF 133 GAD YL+KP LEE+SA + AL+RR + +S Q + N + ++ +G + Sbjct: 93 AGADDYLIKPFDLEELSARMRALSRR-QAGRAESLVQVREVILNPATHEVTVSGK-PVNL 150 Query: 134 TDKESTALAALLQSPNYPVSHAQLFDLLRSGGEEYDAHRIDALIYRVRQKLRSLEEAPMQ 193 + +E T L A + P +S AQL + L + +++ ++ I+ +R+K+ S Sbjct: 151 SAREFTLLQAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGS-----DF 205 Query: 194 IRNIYGEGFLM 204 I+N+ G G+L+ Sbjct: 206 IKNVRGVGYLV 216 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 5/206 (2%) Query: 3 ELGYEISVCSALGQARDILKSRQPDILLSDIGLPDGSLLPELASLRQNFPSMGIIILTAA 62 E +++ + + A +L+ D++L D+ LP L LR+ + ++ILTA+ Sbjct: 22 EHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGKNVLRRLRERHNGVPVMILTAS 81 Query: 63 TRSEERVRCMSDGADYYLVKPVKLEEVSATLTALARRMKTAPHQSSPQSEKWAFNRRSGR 122 +E+V C+ GAD YLVKP ++ E+ A + L RR +T + ++ + R Sbjct: 82 GSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRR-QTPDKAAEIHCGNLVYDSNT-R 139 Query: 123 LSSNGSVALQFTDKESTALAALLQSPNYPVSHAQLFDLLRSGGEEYDAHRIDALIYRVRQ 182 + G V L +E L L+ VS L + S EE A I+ I R+R+ Sbjct: 140 QFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFSLSEEPSADAIEVYISRLRK 199 Query: 183 KLRSLEEAPMQIRNIYGEGFLMLRRS 208 KL A M +R G G+L+ +R Sbjct: 200 KLDRSGAAIMTLR---GLGYLLRQRD 222 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 601,369 Number of extensions: 21820 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 20 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)