BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0176.p
         (491 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313046|ref|YP_003777138.1| RecA-superfamily ATPase [Herbas...   926   0.0  

>gi|300313046|ref|YP_003777138.1| RecA-superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 490

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/491 (92%), Positives = 474/491 (96%), Gaps = 1/491 (0%)

Query: 1   MSHLPQSPLPAAVATLRPSRISLISTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS 60
           M+  PQS LP A    RPSRISL+STGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS
Sbjct: 1   MNEQPQS-LPPAPTGGRPSRISLLSTGIAGFDEILGGGLPAGSLYLIQGLAGSGKTTLAS 59

Query: 61  QVGFAQARSGNKVMLLTLIAESHAKMLNHVSNFDFFDESLVGDQMQMLSGYGALASEGLR 120
           Q+G+AQAR GN+VMLLTLIAESHAKMLNHVSNFDFFDESLVGD+MQMLSGY ALASEGLR
Sbjct: 60  QIGWAQARGGNQVMLLTLIAESHAKMLNHVSNFDFFDESLVGDRMQMLSGYAALASEGLR 119

Query: 121 GLLRLISAELNRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV 180
           GLLR+ISAEL+RHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV
Sbjct: 120 GLLRMISAELSRHRPAMLIIDGFRSVRDSGPSDLNLSEFMHSLNALVFTMNCTTLLLSPV 179

Query: 181 EGNMPESENTLVDGVIELSQHESGMQLEREIKVFKLRGANHLLGKHVFEINQSGVEIFPR 240
           EGN+PESENTLVDGVIELSQ+ESGMQL REIKVFKLRGANHLLGKHVFEINQSGVEIFPR
Sbjct: 180 EGNLPESENTLVDGVIELSQYESGMQLVREIKVFKLRGANHLLGKHVFEINQSGVEIFPR 239

Query: 241 FEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQ 300
           FEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQ
Sbjct: 240 FEATATRAGKVPGTSDRYVSVGIPSWDKCIGGGVVSGSLTCLLGSPGVGKTLMGLHFIEQ 299

Query: 301 GLKDGQQCLILGFYESPERLLAKARKAGMQLDEHIDSGALQVMWQLPLEMLCDDLAKRML 360
           GLKDGQQCLILGFYESPERLLAKARKAGMQLD HIDSGALQVMWQLPLEMLCDDLAKRML
Sbjct: 300 GLKDGQQCLILGFYESPERLLAKARKAGMQLDAHIDSGALQVMWQLPLEMLCDDLAKRML 359

Query: 361 DNIARRGVTRLLIDGVDGLRSIVVQQQRMRPFLVALTNELRARGVTTFITEQLPYFRESQ 420
           D+IARRGVTRLLIDGVDGLRSIVVQ QRMRPFLVALTNELRARGVTTFITEQLPYFRES+
Sbjct: 360 DDIARRGVTRLLIDGVDGLRSIVVQPQRMRPFLVALTNELRARGVTTFITEQLPYFRESR 419

Query: 421 PQVDPNSSQLYENMMLLEYVVKDSVNRRQISVMKLRENGYDGASRLMNISDAGIEIDGLV 480
           PQVDP+SSQLYENMMLLEYVVKD VNRRQI+VMKLRENGYDGA+RLMNISDAGIEIDGLV
Sbjct: 420 PQVDPSSSQLYENMMLLEYVVKDDVNRRQIAVMKLRENGYDGAARLMNISDAGIEIDGLV 479

Query: 481 TPLAAPVADGR 491
           +P + P+ DGR
Sbjct: 480 SPASTPLVDGR 490


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,545,042
Number of extensions: 66481
Number of successful extensions: 310
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,198,455
Effective search space: 481778910
Effective search space used: 481778910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)