BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0175.p (192 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 261 3e-71 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 247 4e-67 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 233 5e-63 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 232 2e-62 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 229 1e-61 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 261 bits (667), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 147/152 (96%), Positives = 152/152 (100%) Query: 1 VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60 VAARGGGVVG+VV+TMEAIN+ASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 334 VAARGGGVVGQVVETMEAINEASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 393 Query: 61 FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120 FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGT+LVRQAGSTMSEVVESVKRVTDV Sbjct: 394 FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDV 453 Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQN 152 VSEISAASTEQSVGIDEINRAV+QMDEVTQQN Sbjct: 454 VSEISAASTEQSVGIDEINRAVTQMDEVTQQN 485 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 247 bits (631), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/152 (83%), Positives = 141/152 (92%) Query: 1 VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60 +A +GG VVG+VVQTME I ++SNRI +IISVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 333 IATQGGAVVGQVVQTMEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 61 FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120 FAVVASEVRSLAQRSASAAKEIKQLIDDSV KVGAG+ LV +AG+TMSEVV SV+RVTDV Sbjct: 393 FAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDV 452 Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQN 152 V+EISAAS EQS GI+EINRA++QMDEVTQQN Sbjct: 453 VAEISAASNEQSTGIEEINRAITQMDEVTQQN 484 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 233 bits (595), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 122/152 (80%), Positives = 138/152 (90%) Query: 1 VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60 VA +GG VVG+VVQTM INDAS +IV+IISVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 332 VAVQGGSVVGQVVQTMGEINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRG 391 Query: 61 FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120 FAVVASEVR+LAQRSASAAKEIK LIDDSVS+V G+ LV QAG+TM+EVV SV+RVTDV Sbjct: 392 FAVVASEVRTLAQRSASAAKEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDV 451 Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQN 152 V+EISAAS EQS GI++IN A++QMD+VTQQN Sbjct: 452 VAEISAASNEQSDGIEQINHAITQMDQVTQQN 483 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 232 bits (591), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/151 (78%), Positives = 137/151 (90%) Query: 2 AARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 61 A++GG VV +VV TM+AIND+S +IV+IISVIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 335 ASKGGEVVSQVVDTMQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF 394 Query: 62 AVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDVV 121 AVVASEVRSLAQRSA+AAKEIK LIDDSV KV AG+ LV QAG+TMSEVV SV+RVTD+V Sbjct: 395 AVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIV 454 Query: 122 SEISAASTEQSVGIDEINRAVSQMDEVTQQN 152 EI+ AS EQS GI+++NRA++QMDEVTQQN Sbjct: 455 GEIAEASREQSTGIEQVNRAITQMDEVTQQN 485 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 229 bits (584), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/152 (78%), Positives = 137/152 (90%) Query: 1 VAARGGGVVGEVVQTMEAINDASNRIVEIISVIDGIAFQTNILALNAAVEAARAGEQGRG 60 +A++GG VVG+VVQTME I ++S RI +IISVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 333 IASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 61 FAVVASEVRSLAQRSASAAKEIKQLIDDSVSKVGAGTTLVRQAGSTMSEVVESVKRVTDV 120 FAVVASEVRSLAQRSA AAKEIK+LIDDSV KV AG+ LV +AGSTM+EVV SV+RVTDV Sbjct: 393 FAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDV 452 Query: 121 VSEISAASTEQSVGIDEINRAVSQMDEVTQQN 152 V+EISAA+ EQS GI+E+N A++QMDE TQQN Sbjct: 453 VAEISAATQEQSGGINEVNLAITQMDETTQQN 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 298,759 Number of extensions: 6705 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 71 Length of query: 192 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 112 Effective length of database: 1,241,070 Effective search space: 138999840 Effective search space used: 138999840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)