BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0166.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313328|ref|YP_003777420.1| type IV / VI secretion system t...    60   2e-10
gi|300310072|ref|YP_003774164.1| transmembrane protein [Herbaspi...    58   7e-10

>gi|300313328|ref|YP_003777420.1| type IV / VI secretion system
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 3/115 (2%)

Query: 25  DPAALSAQLDAAIAQARRAGQDAGHADADIEEALFAVLALADEIILATDWLGRAEWQRRL 84
           D  +  +++   + +  R  +    +  DI  A +A  A  DEIIL + +  R  W+RR 
Sbjct: 50  DDVSFESKMQKFLGEVERNAKKINASPDDIYAAKYAFCASVDEIILRSKFGIRPAWERRP 109

Query: 85  LQRRYFGITNAGVAFYTRLDAL---DAARSGVREVYFLCLSLGFAGRYGYDRNQK 136
           LQ   FG   AG  F+ +L+ L     A     EV+ +CL LGF G+Y  +  +K
Sbjct: 110 LQLTMFGDQLAGENFFHKLEELRLHGNAHIQALEVFHMCLLLGFQGKYALEGPEK 164


>gi|300310072|ref|YP_003774164.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score = 57.8 bits (138), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 25  DPAALSAQLDAAIAQARRAGQDAGHADADIEEALFAVLALADEIILATDWLGRAEWQRRL 84
           D A+ + ++   +    R  +    +  D+  A +A  A  DEIIL +++  R  W+RR 
Sbjct: 56  DEASFAIKMQKFLGDVERNAKKLDVSPEDVYAAKYAFCASVDEIILRSNFTIRDAWERRP 115

Query: 85  LQRRYFGITNAGVAFYTRLDAL---DAARSGVREVYFLCLSLGFAGRYGYDRNQK 136
           LQ   FG   AG  F+ +L+ L     A     EV+ +CL LGF G+Y  +  +K
Sbjct: 116 LQLTMFGDQLAGENFFKQLEDLRVRGNAHVQALEVFHMCLLLGFQGKYALEGPEK 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 622,351
Number of extensions: 22917
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)