BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0162.p (227 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310849|ref|YP_003774941.1| two component transcription reg... 179 2e-46 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 147 7e-37 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 141 3e-35 gi|300313665|ref|YP_003777757.1| two component transcription reg... 138 3e-34 gi|300309981|ref|YP_003774073.1| two component response regulato... 119 2e-28 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 1 MRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGAELARLWRRESN 60 +R LL EYL +GL +A N +E L DL++LDL LP DG L R R S+ Sbjct: 19 IRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLTLCRNLRATSS 78 Query: 61 MSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQVAQTPVTRGKH 120 + +I +T R E D ++GLE+GADDY+ KPF RE+ AR+R+VLRRT A P Sbjct: 79 VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQ--ALPPNMAQPD 136 Query: 121 PRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISREQLIEGTRAFD 180 A +FAGW L+L R L D VAL+ AEF LL VFL P R+++R+QL+E T+ + Sbjct: 137 VAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRE 196 Query: 181 -DVYDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLDTEIET 224 D +DR++D+QI RLR+KL D + P +++T R GY L T + T Sbjct: 197 SDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTT 241 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 147 bits (371), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 114/188 (60%), Gaps = 7/188 (3%) Query: 36 LVLLDLGLPDADGAELARLWRRESNMSIICVTGRDEEADLVMGLELGADDYITKPFSLRE 95 LV+LD+ LPD DG L + RR+SN+ +I +T +E D V+GLELGADDYI KP+S RE Sbjct: 51 LVILDVMLPDTDGFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRE 110 Query: 96 VLARVRAVLRRTGQVAQTPVTRGKHPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNL 155 +LAR++A+ RR G + PR Y+FAG++L+ R L V LT ++ L Sbjct: 111 LLARIKAIHRRIG------IDSSAAPRYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQL 164 Query: 156 LVVFLSAPGRIISREQLIEGTRAFD-DVYDRAIDVQILRLRRKLEADPKNPALLRTERGA 214 L F+ PG ++ R L E TR D DR++DVQI +LR +L + P L++T RGA Sbjct: 165 LKYFVEHPGDVLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGA 224 Query: 215 GYFLDTEI 222 GY ++ Sbjct: 225 GYVFSADV 232 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 141 bits (356), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 126/212 (59%), Gaps = 4/212 (1%) Query: 12 HGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGAELARLWRRESNMS-IICVTGRD 70 G +A NA N YDL++LDL LP DG + R R + + II +T + Sbjct: 40 QGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKG 99 Query: 71 EEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQVAQTPVTRGKHPRAYQFAGWN 130 E+ D ++GLE+GADDY+ KPF+ RE++AR+ AVLRR G + P + P ++F + Sbjct: 100 EDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGP-DELPGAPSETPETFEFGDFI 158 Query: 131 LNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISREQLIEGTRAFD-DVYDRAIDV 189 L+L TR L + +++LT EF++L VF + +SRE+L+E R + +V+DR++DV Sbjct: 159 LDLGTRTLKK-NGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDV 217 Query: 190 QILRLRRKLEADPKNPALLRTERGAGYFLDTE 221 QI RLR+ +E DP NP ++T G GY E Sbjct: 218 QISRLRKLIEPDPANPLYIQTVWGLGYVFIPE 249 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 138 bits (348), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 1 MRQLLVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGAELARLWRRESN 60 +R LL +YL +A E L + D+++LDL +P DG EL R R++ N Sbjct: 16 IRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLMMPGEDGLELCRELRKKRN 75 Query: 61 MSIICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQVAQT-PVTRGK 119 ++ +T R D ++GLE+GADDY+ KPF RE+LAR++ +LRR + R Sbjct: 76 TPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRARSFPEKLEADRVS 135 Query: 120 HPRAYQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISREQLIEGTRAF 179 H FAGW L+ R+ +P ++ L +++ +L L P R +SR+ L+ Sbjct: 136 H---IHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRALSRDFLLNTVYGK 192 Query: 180 DDV-YDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLDTEI 222 + + +DR+IDV I RLR++L +P+ PAL+RT R GY L ++ Sbjct: 193 EAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYMLMADV 236 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 119/217 (54%), Gaps = 15/217 (6%) Query: 5 LVEYLAGHGLPADSAINAAEANAALAARSYDLVLLDLGLPDADGAE-LARLWRRESNMSI 63 L L G AD N EA++AL+ + +DL++LDLGLP G E L RL R S + + Sbjct: 16 LTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEVLRRLRARNSRLPV 75 Query: 64 ICVTGRDEEADLVMGLELGADDYITKPFSLREVLARVRAVLRRTGQVAQTPVTRGKHPRA 123 + +T D V GL+LGADDY+ KPF+L E+ ARVRA+ RR T + G P + Sbjct: 76 LILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIRHG--PLS 133 Query: 124 YQFAGWNLNLNTRRLTAPDQRSVALTNAEFNLLVVFLSAPGRIISREQLIEGTRAF-DDV 182 Y G R+ ++ + L+ E LL V L GR++S+EQL++ + ++V Sbjct: 134 YDQVG--------RIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEV 185 Query: 183 YDRAIDVQILRLRRKLEADPKNPALLRTERGAGYFLD 219 + AI+V + RLR+K+E A T RG GY L+ Sbjct: 186 SNNAIEVYVHRLRKKIEVGGVRIA---TVRGLGYCLE 219 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 554,749 Number of extensions: 17697 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 29 Length of query: 227 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 145 Effective length of database: 1,231,600 Effective search space: 178582000 Effective search space used: 178582000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)