BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0153.p
         (435 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311896|ref|YP_003775988.1| peptidyl-prolyl cis/trans isome...   869   0.0  

>gi|300311896|ref|YP_003775988.1| peptidyl-prolyl cis/trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/435 (98%), Positives = 434/435 (99%)

Query: 1   MTLSFPLADVQAEVEKRLKVRARTAKAPGFRPGKVPMKMVAAQFGYQVETEVLNDKVGRA 60
           MTLSFPLADVQAEVEKRLKVRARTAKAPGFRPGKVPMKMVAAQFGYQVETEVLNDKVGRA
Sbjct: 15  MTLSFPLADVQAEVEKRLKVRARTAKAPGFRPGKVPMKMVAAQFGYQVETEVLNDKVGRA 74

Query: 61  FNDAAVENNLRVAGFPRIEPKTSEEAGEGKLAFDATFEVYPEVTLGDLSGAEVEKTTAAV 120
           FNDAAVENNLRVAGFPRIEPKTSEEAGEGKLAFDATFEVYPEVTLGDLSGAEVEKTTA+V
Sbjct: 75  FNDAAVENNLRVAGFPRIEPKTSEEAGEGKLAFDATFEVYPEVTLGDLSGAEVEKTTASV 134

Query: 121 SDAEIDKTIDILRKQRVHYHVKGEQGAHGDGGADQSAQNGDRVTVDFVGKIDGVEFQGGK 180
           SDAEIDKTIDILRKQRVHYHVKGEQGAHGDGGADQSAQNGDRVTVDFVGKIDGVEFQGGK
Sbjct: 135 SDAEIDKTIDILRKQRVHYHVKGEQGAHGDGGADQSAQNGDRVTVDFVGKIDGVEFQGGK 194

Query: 181 ADAFPFVLGEGRMLPEFEAATIGLKVGESKSFPLAFPEDYHGKDVAGKTAEFTITVKKIE 240
           A+AFPFVLGEGRMLPEFEAATIGLKVGESK+FPLAFPEDYHGKDVAGKTAEFTITVKKIE
Sbjct: 195 AEAFPFVLGEGRMLPEFEAATIGLKVGESKTFPLAFPEDYHGKDVAGKTAEFTITVKKIE 254

Query: 241 WAHMPEVDAVFAQSLGIEDGDLTKMREDIKKNLEREVTARTKAKTKDSVMNALIKASELD 300
           WAHMPEVDAVFAQSLGIEDGDLTKMREDIKKNLEREVTARTKAKTKDSVMNALIKASEL+
Sbjct: 255 WAHMPEVDAVFAQSLGIEDGDLTKMREDIKKNLEREVTARTKAKTKDSVMNALIKASELE 314

Query: 301 VPQALIDQDVERLSEMARQDMAQRGMDPKVMQLPKELFTAQAERRVRLGLILAEVVKQNK 360
           VP+ALIDQDVERL+EMARQDMAQRGMDPK MQLPKELFTAQAERRVRLGLILAEVVKQNK
Sbjct: 315 VPKALIDQDVERLAEMARQDMAQRGMDPKGMQLPKELFTAQAERRVRLGLILAEVVKQNK 374

Query: 361 LEATEEQVKAQIEDFAQSYEDPQQVLKYYFSDRRRLAEVEALVLEENVVNYVLGKAKVSE 420
           LEATEEQVKAQIEDFAQSYEDPQQVLKYYFSDRRRLAEVEALVLEENVVNYVLGKAKVSE
Sbjct: 375 LEATEEQVKAQIEDFAQSYEDPQQVLKYYFSDRRRLAEVEALVLEENVVNYVLGKAKVSE 434

Query: 421 KPVSFDELMGNQAQA 435
           KPVSFDELMGNQAQA
Sbjct: 435 KPVSFDELMGNQAQA 449


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,223,548
Number of extensions: 50302
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,203,190
Effective search space: 417506930
Effective search space used: 417506930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)