BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0145.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311892|ref|YP_003775984.1| signal peptide protein [Herbasp...   259   5e-71
gi|300311888|ref|YP_003775980.1| signal peptide protein [Herbasp...   114   4e-27
gi|300311891|ref|YP_003775983.1| spore coat U domain-containing ...    67   7e-13

>gi|300311892|ref|YP_003775984.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  259 bits (663), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 143/166 (86%), Positives = 155/166 (93%)

Query: 1   MFFIKKNRIVAASIAAVVLASSAPASFAATASGTLTISASVVAACTVVGSAIAFGAYTQS 60
           MF  KKNR +AA +AA  L  +APASFAATAS +LTISASVVA+CTVVGS+IAFGAYTQ+
Sbjct: 1   MFVTKKNRFIAACVAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQA 60

Query: 61  VVNQSGTITVLCTNGTAYNVGLDAGTGTGASVSNRKMSAAGGGTLNYALYRDSARSNNWG 120
           VVNQ+G+ITV CTNGTAYNVGLDAGTGTGA+VSNRKMSA+GGGTLNYALYRDSARS+NWG
Sbjct: 61  VVNQTGSITVQCTNGTAYNVGLDAGTGTGATVSNRKMSASGGGTLNYALYRDSARSSNWG 120

Query: 121 STIGTDTLTGTGSGLTQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166
           STIGTDTLTGTGSGL QTLTVYGQIPAAQTPLAGSYSDTVTVTLTY
Sbjct: 121 STIGTDTLTGTGSGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166


>gi|300311888|ref|YP_003775980.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  114 bits (285), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 91/142 (64%), Gaps = 6/142 (4%)

Query: 26  SFAATASGTLTISASVVAACTVVGSAIAFGAYTQSVVNQSGTITVLCTNGTAYNVGLDAG 85
           + AA  +G L ISA V   C+V  +A+ FG Y  S + Q+  I V C+NGT+Y VGLD G
Sbjct: 23  ALAAAPTGNLEISAIVTQQCSVQSAALPFGVYGSSALQQNAQIGVTCSNGTSYTVGLDQG 82

Query: 86  TGTGASVSNRKMSAAGGGT-LNYALYRDSARSNNWGSTIGTDTLTGTGSGLTQTLTVYGQ 144
               A  +NR+M++A G + ++Y LY+D+AR+  W +  G+  + G G+G  Q   VYG 
Sbjct: 83  A---AGSANRRMASADGASWIDYGLYQDAARTTAWNT--GSAAVAGVGTGNAQNFPVYGY 137

Query: 145 IPAAQTPLAGSYSDTVTVTLTY 166
           +PA Q+P AG+YSD V++TL+Y
Sbjct: 138 VPAGQSPRAGAYSDVVSITLSY 159


>gi|300311891|ref|YP_003775983.1| spore coat U domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 67.0 bits (162), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 16/135 (11%)

Query: 45  CTVVGSAIAFGAY---TQSVVNQSGTITVLCTNGT----AYNVGLDAGTGTGASVSNRKM 97
           C+   S ++FG Y   + + ++ +G+I+V C        AY V L +G  +GA +S RKM
Sbjct: 41  CSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSGN-SGA-LSQRKM 98

Query: 98  SAAGGGTLNYALYRDSARSNNWG------STIGTDTLTGTGSGLTQTLTVYGQIPAAQTP 151
             +G  +LNY +Y D+ARS+ WG      S I    L    + + +  TVYG++P +Q  
Sbjct: 99  -LSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPGSQNV 157

Query: 152 LAGSYSDTVTVTLTY 166
            AGSY DT+T+ +TY
Sbjct: 158 KAGSYLDTLTILITY 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.124    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 362,485
Number of extensions: 12545
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)