BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0144.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311891|ref|YP_003775983.1| spore coat U domain-containing ...   231   1e-62
gi|300311892|ref|YP_003775984.1| signal peptide protein [Herbasp...    71   4e-14
gi|300311888|ref|YP_003775980.1| signal peptide protein [Herbasp...    70   7e-14

>gi|300311891|ref|YP_003775983.1| spore coat U domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  231 bits (590), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 128/139 (92%)

Query: 23  PAQAQQLCSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYTVKLSAGSSGAY 82
           PA AQQ+CSA+S+PVSFGLYDPQSS+ +DN G+I+VTCQAT SLL+AYTVKLS+G+SGA 
Sbjct: 34  PAGAQQVCSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSGNSGAL 93

Query: 83  AQRKMLSGANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLTPVSRSYTVYGRVPG 142
           +QRKMLSGANSLNYQ Y DAA +S+WGDGSS TSF++DGYLLQVLTPV + YTVYGRVPG
Sbjct: 94  SQRKMLSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPG 153

Query: 143 SQNVKAGSYMDTLTVLITY 161
           SQNVKAGSY+DTLT+LITY
Sbjct: 154 SQNVKAGSYLDTLTILITY 172


>gi|300311892|ref|YP_003775984.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 70.9 bits (172), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 16/135 (11%)

Query: 30  CSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAYTVKLSAGS-SGA-YAQRKM 87
           C+   + ++FG Y   + + ++ TG+ITV C        AY V L AG+ +GA  + RKM
Sbjct: 45  CTVVGSSIAFGAY---TQAVVNQTGSITVQCTNGT----AYNVGLDAGTGTGATVSNRKM 97

Query: 88  -LSGANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLTPVSRSYTVYGRVPGSQNV 146
             SG  +LNY  YRD+A +S WG    + +    G      + ++++ TVYG++P +Q  
Sbjct: 98  SASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTG------SGLAQTLTVYGQIPAAQTP 151

Query: 147 KAGSYMDTLTVLITY 161
            AGSY DT+TV +TY
Sbjct: 152 LAGSYSDTVTVTLTY 166


>gi|300311888|ref|YP_003775980.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 70.1 bits (170), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 25/153 (16%)

Query: 18  ALAAGP-------AQAQQLCSAASNPVSFGLYDPQSSSNLDNTGNITVTCQATASLLIAY 70
           ALAA P       A   Q CS  S  + FG+Y    SS L     I VTC    S    Y
Sbjct: 23  ALAAAPTGNLEISAIVTQQCSVQSAALPFGVY---GSSALQQNAQIGVTCSNGTS----Y 75

Query: 71  TVKLSAGSSGAYAQRKMLS--GANSLNYQAYRDAAHTSVWGDGSSSTSFVSDGYLLQVLT 128
           TV L  G++G+ A R+M S  GA+ ++Y  Y+DAA T+ W  GS++ + V  G       
Sbjct: 76  TVGLDQGAAGS-ANRRMASADGASWIDYGLYQDAARTTAWNTGSAAVAGVGTGN------ 128

Query: 129 PVSRSYTVYGRVPGSQNVKAGSYMDTLTVLITY 161
             ++++ VYG VP  Q+ +AG+Y D +++ ++Y
Sbjct: 129 --AQNFPVYGYVPAGQSPRAGAYSDVVSITLSY 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.124    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 403,416
Number of extensions: 14127
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)