BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0143.p
         (767 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin...  1238   0.0  

>gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin
           PapC protein [Herbaspirillum seropedicae SmR1]
          Length = 764

 Score = 1238 bits (3202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/743 (83%), Positives = 681/743 (91%)

Query: 25  AAEPGDEILLLEVAINGRNTSLVAQFTRRQQALYATASELRSLKLRVDGADEELIALRAL 84
           AAEPGDE+LLLEVAINGR+T+LVAQFTRRQ+ LYA+A+ELRSL LRVDG D+ELIA+RAL
Sbjct: 22  AAEPGDELLLLEVAINGRDTNLVAQFTRRQRELYASAAELRSLNLRVDGGDDELIAIRAL 81

Query: 85  TTAVDLDEAGAKINLTVPARFMNTTDIDAASIASKVPLSPGGQGLVLNYDLLASSSQNQH 144
            + + LDEA AK+NL +  RFMN TDI+A S A++VPLSP  QG VLNYDLLASS Q QH
Sbjct: 82  ASRIQLDEAAAKVNLEIAPRFMNITDIEANSAAARVPLSPAAQGAVLNYDLLASSGQGQH 141

Query: 145 ALGGLFDARWFSGSSVFSSTGLGYTGNSGGVSARLESTYTYSDATTLTRYRLGDVINSSL 204
           ALGGLFDARWFSGS+V SS+ LGYTGNSGGVSARLEST TYS   +LTRYRLGDVINSSL
Sbjct: 142 ALGGLFDARWFSGSAVVSSSALGYTGNSGGVSARLESTLTYSQPASLTRYRLGDVINSSL 201

Query: 205 AWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVPPGPF 264
           AWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVPPGPF
Sbjct: 202 AWSRSVRLGGFQYASDFNLRPDLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVPPGPF 261

Query: 265 EIRQPPIASGAGQIAVAVTDELGRQTFRTINFYATDRLLKPGLSSYSAEGGWVRRNYGLR 324
           EIRQPPIASGAGQIAVAVTDELGRQT RT+NFYATDRLLKPGLSSYSAEGGWVRR+YGLR
Sbjct: 262 EIRQPPIASGAGQIAVAVTDELGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVRRHYGLR 321

Query: 325 SNDYGQFALSGTARHGMSDWLTLEGHAEAMRSLKLAGGGAVFNLGNRAVLASSLAASSSE 384
           SNDYGQFALSGTARHG+SDWLTLEGHAEAM  LKL GGGAVFNLGNRAVLAS+L+AS++ 
Sbjct: 322 SNDYGQFALSGTARHGVSDWLTLEGHAEAMHGLKLGGGGAVFNLGNRAVLASALSASNAA 381

Query: 385 GNSGQQVSLAIERNADPVSLSLSRTQSTRGYQDIGALQGAPVSRSATLATLGLNLREYGS 444
             SGQQ SLAIERNADP+SLSLSRTQ+TR YQDIGALQGAPVSRSAT+ATLG+NL   GS
Sbjct: 382 SGSGQQFSLAIERNADPLSLSLSRTQATRDYQDIGALQGAPVSRSATVATLGMNLGSAGS 441

Query: 445 LSMAYARSKSPLLFTELGTSNLAVSETVTVTWFKSVGNTSNFYLTAYRDFRSSGYGATIG 504
           LSMAYARSKSPLLFT+LGT+ LA SET+T+T+FKS+G+T++ YLT YRDFR+SGYGA++G
Sbjct: 442 LSMAYARSKSPLLFTDLGTTGLADSETLTLTYFKSLGSTASMYLTGYRDFRNSGYGASVG 501

Query: 505 LIIPFGGRDVAGASVSNNNGQRTSTLQASRSTVAIGDLGWQLQDTEGSYRQRIGQLNYKS 564
           +IIP GGRDV GAS++NNNGQRT+TLQASRSTVAIGDLGWQLQDTEGSY+QR+ QLNYKS
Sbjct: 502 IIIPLGGRDVVGASMNNNNGQRTATLQASRSTVAIGDLGWQLQDTEGSYQQRLAQLNYKS 561

Query: 565 RYGSVSAAASQSNGATSQRLGARGALAFMDGSAFATDWIDDSFAVVNASGVKNVGIYNEN 624
           R GS SA  SQ    +SQRLGARGALAFMDG  FA+DWIDDSFAVVNASGVKNVGIYNEN
Sbjct: 562 RVGSFSAGVSQGGTISSQRLGARGALAFMDGGVFASDWIDDSFAVVNASGVKNVGIYNEN 621

Query: 625 RYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVVVHFNAR 684
           RYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGV+VHFNAR
Sbjct: 622 RYAGRTDDNGQLLLTDLRAYDVNKISVDVLDLPLTLQLDQSDQYVKPRDRSGVIVHFNAR 681

Query: 685 RASDVTIILKDAAGEFIPLGSSIRVRESGLQAPVGYDGVSYLQELGPVNTLDVLLPSGAR 744
           RASDVT+ LKDAAG ++P+G+SIRVRE+GL+APVGYDGVSYLQEL P+NTLDVLLPSG +
Sbjct: 682 RASDVTLTLKDAAGNYLPIGASIRVRETGLEAPVGYDGVSYLQELAPLNTLDVLLPSGDQ 741

Query: 745 CQAMLTPPARSEGGMSNEIVTCR 767
           C A L PP RSEGGM+NE+V CR
Sbjct: 742 CHATLVPPVRSEGGMANEVVVCR 764


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,389,883
Number of extensions: 104346
Number of successful extensions: 350
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 674
Effective length of database: 1,179,515
Effective search space: 794993110
Effective search space used: 794993110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)