BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0142.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311889|ref|YP_003775981.1| PilP assembly chaperone transme...   377   e-106

>gi|300311889|ref|YP_003775981.1| PilP assembly chaperone
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/228 (79%), Positives = 206/228 (90%)

Query: 3   LACLASTVGWQAAHASNFEIAPVVLELSSSRTAGVIKIVNNDNHNVSLQLRAYDWQQADS 62
           LACL +      A ASNFEIAPVVLELSS+RTAGV+KIVNNDNHNVSLQ+RAY+W Q DS
Sbjct: 21  LACLLTITAVPPALASNFEIAPVVLELSSARTAGVVKIVNNDNHNVSLQVRAYEWNQVDS 80

Query: 63  KDELQPTQNLILSPPVFNLAPGASQVIRVVAKQPAAPTEIAYRLLIDEIPAATEGATINF 122
           KDELQPTQNLI+SPPVFNLAPGASQVIRVV++Q A  +EIA+RLLIDEIP+++EGA I+F
Sbjct: 81  KDELQPTQNLIISPPVFNLAPGASQVIRVVSRQAAGASEIAFRLLIDEIPSSSEGALISF 140

Query: 123 KFRISMPVFIAPSAAPKAQLEYQLRAGKPLRLLVENSGNRRARLLDLALTLPNGKKLSAP 182
           KFRISMPVFIA + APK QL+YQL AGKP RL+V+NSGNRRARLLDLALTLPNGKK++AP
Sbjct: 141 KFRISMPVFIAANTAPKLQLDYQLHAGKPARLMVQNSGNRRARLLDLALTLPNGKKINAP 200

Query: 183 GGGNPYTLAGITRQYLIESDTPLAVGSRVKLTANSDAGPIDAELTVAP 230
            GGNPYTLAG+TRQYLIE++TPLA GS+VKLTANSDAGPID ELTVAP
Sbjct: 201 AGGNPYTLAGLTRQYLIETETPLAAGSKVKLTANSDAGPIDTELTVAP 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,030
Number of extensions: 27204
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)