BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0141.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311888|ref|YP_003775980.1| signal peptide protein [Herbasp...   182   1e-47
gi|300311892|ref|YP_003775984.1| signal peptide protein [Herbasp...   135   2e-33
gi|300311891|ref|YP_003775983.1| spore coat U domain-containing ...    59   3e-10

>gi|300311888|ref|YP_003775980.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  182 bits (462), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 113/143 (79%), Gaps = 5/143 (3%)

Query: 20  DALAVSSTGNLDISATVPSQCVVQSAALPFGSYAASALQQNAQIGVACSNGTSYTVSLDG 79
           +ALA + TGNL+ISA V  QC VQSAALPFG Y +SALQQNAQIGV CSNGTSYTV LD 
Sbjct: 22  NALAAAPTGNLEISAIVTQQCSVQSAALPFGVYGSSALQQNAQIGVTCSNGTSYTVGLDQ 81

Query: 80  GTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVGNGSNQNIPVYG 139
           G    AN   R++++ADG + ++YGLYQDAART +W  +TGS  VAGVG G+ QN PVYG
Sbjct: 82  GAAGSAN---RRMASADGASWIDYGLYQDAARTTAW--NTGSAAVAGVGTGNAQNFPVYG 136

Query: 140 YIPGGQTARAGSYSDVVAITLSY 162
           Y+P GQ+ RAG+YSDVV+ITLSY
Sbjct: 137 YVPAGQSPRAGAYSDVVSITLSY 159


>gi|300311892|ref|YP_003775984.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  135 bits (340), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)

Query: 9   LAAGLLSCVNLDALAVSSTGNLDISATVPSQCVVQSAALPFGSYAASALQQNAQIGVACS 68
           +AA  L+C    + A +++ +L ISA+V + C V  +++ FG+Y  + + Q   I V C+
Sbjct: 14  VAAATLTCAAPASFAATASASLTISASVVASCTVVGSSIAFGAYTQAVVNQTGSITVQCT 73

Query: 69  NGTSYTVSLDGGTGSGANVATRKLSTADGVNTLNYGLYQDAARTRSWGNSTGSDTVAGVG 128
           NGT+Y V LD GTG+GA V+ RK+S A G  TLNY LY+D+AR+ +WG++ G+DT+ G G
Sbjct: 74  NGTAYNVGLDAGTGTGATVSNRKMS-ASGGGTLNYALYRDSARSSNWGSTIGTDTLTGTG 132

Query: 129 NGSNQNIPVYGYIPGGQTARAGSYSDVVAITLSY 162
           +G  Q + VYG IP  QT  AGSYSD V +TL+Y
Sbjct: 133 SGLAQTLTVYGQIPAAQTPLAGSYSDTVTVTLTY 166


>gi|300311891|ref|YP_003775983.1| spore coat U domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 17/136 (12%)

Query: 40  CVVQSAALPFGSY--AASALQQNA-QIGVACSNGTS----YTVSLDGGTGSGANVATRKL 92
           C   S+ + FG Y   +SA   NA  I V C    S    YTV L  G  SGA ++ RK+
Sbjct: 41  CSASSSPVSFGLYDPQSSATIDNAGSISVTCQATVSLLMAYTVKLSSG-NSGA-LSQRKM 98

Query: 93  STADGVNTLNYGLYQDAARTRSWGN-STGSDTVAG-----VGNGSNQNIPVYGYIPGGQT 146
               G N+LNY +Y DAAR+  WG+ S+G+  +       V     ++  VYG +PG Q 
Sbjct: 99  --LSGANSLNYQVYTDAARSSIWGDGSSGTSFITDGYLLQVLTPVVKHYTVYGRVPGSQN 156

Query: 147 ARAGSYSDVVAITLSY 162
            +AGSY D + I ++Y
Sbjct: 157 VKAGSYLDTLTILITY 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.125    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 479,762
Number of extensions: 20036
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)