BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0140.p (600 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311887|ref|YP_003775979.1| two component sensor histidine ... 1011 0.0 gi|300311810|ref|YP_003775902.1| two component sensor histidine ... 130 3e-31 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 122 7e-29 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 89 7e-19 gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 87 4e-18 >gi|300311887|ref|YP_003775979.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 633 Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/594 (82%), Positives = 539/594 (90%) Query: 1 MPITRQSGLARASTGIFFLLALLLSLGVAAFSYHSVRDFERRAVWLQHSYTVLNKLEEAN 60 MPIT+QS LARASTGIFFLLALLLS+GVA FSYHSVRDFE+RAVWLQH++TV+N LEE N Sbjct: 24 MPITKQSQLARASTGIFFLLALLLSIGVAGFSYHSVRDFEQRAVWLQHTHTVINVLEETN 83 Query: 61 STLRDTVSSSRGFALSGEQEYRNNFESGVRHVNALLQDLRRLLSDNPRQAGLLGQTEDLV 120 S LR+TV +SRG+ LSG +EYR +FE+GVRHV AL+QDLRRL+SDN RQ L TEDLV Sbjct: 84 SALRETVGNSRGYVLSGNEEYRTSFEAGVRHVQALMQDLRRLMSDNERQIERLDSTEDLV 143 Query: 121 MQRLTLSRQLMELSQEEGRARVLEGKELGERIRTGFEQMKGNENALLATRAHDTAMSANL 180 QRL LSR+++ L E+ R RVLEGK L + IR F +MKGNENALLA R+ DT+ SA+L Sbjct: 144 NQRLALSREILALRPEQARERVLEGKALSDEIRRRFAEMKGNENALLAKRSQDTSASADL 203 Query: 181 TIFMVISGSLLSIALLLLVYRKLRKEMSRRVEAQQRAQAYSDEIEDLYNNAPCGYHSVDE 240 TIFMV+SGSLLS+ALL+LVY KLR+EM RR++AQQRAQAYSDEIEDLYNNAPCGYHSVDE Sbjct: 204 TIFMVVSGSLLSMALLVLVYSKLRREMDRRIDAQQRAQAYSDEIEDLYNNAPCGYHSVDE 263 Query: 241 TDKRIIKINDTELKWLGYTREQVVGRMTQADLLAPASAARYERELQPQFLLRREISGIDL 300 +DK+IIKINDTELKWLGYTREQVVGRMT DLLAPASA RY RELQPQF+L+REISGIDL Sbjct: 264 SDKKIIKINDTELKWLGYTREQVVGRMTHTDLLAPASAERYLRELQPQFMLKREISGIDL 323 Query: 301 NFRRADGSEFTALVNATAIPSRDNSKLISRTVIYDISERKRAEEEIEALNADLERQAQHL 360 N+RRADGSEFTALVNATAIPSRD SKLISRTVIYDIS+RKRAEEEIEALNADL+RQA HL Sbjct: 324 NYRRADGSEFTALVNATAIPSRDRSKLISRTVIYDISDRKRAEEEIEALNADLKRQALHL 383 Query: 361 HNVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRNVRKMDA 420 H+VNKELESFSYSVSHDLRAPLRAISGYAMILEEDYA AIDEKGREQLQVIRRNVRKMD Sbjct: 384 HSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYADAIDEKGREQLQVIRRNVRKMDE 443 Query: 421 LINDLLKLAKSTTGELTLQRFSMDELVAQVVAGLQQENPGVIFDVPRLEGAVANRGLIAQ 480 LINDLLKLAKSTTGELTL+RFSMD+LV QV+AGL++ENP V+FDVP LEGAVANRGLI Q Sbjct: 444 LINDLLKLAKSTTGELTLERFSMDDLVRQVIAGLRRENPNVLFDVPPLEGAVANRGLITQ 503 Query: 481 VWENLLSNAVKFSSKSEQPRVCVTMQANADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 VWENLLSNAVKFSSKSEQP V V+MQ +EY+YGVHDNGVGFDMRYAHKLFGTFQRLHR Sbjct: 504 VWENLLSNAVKFSSKSEQPAVRVSMQVEPEEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 563 Query: 541 QEEYAGTGIGLALVQRIVVRHTGRVWAESKPREGASFYFALPRKGVLPSLGEAR 594 QEEYAGTGIGLALVQRIV+RHTGRVWA+SKP EGASFYF+LPRKG+ PSL E R Sbjct: 564 QEEYAGTGIGLALVQRIVIRHTGRVWAQSKPGEGASFYFSLPRKGLSPSLVERR 617 >gi|300311810|ref|YP_003775902.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 535 Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/333 (31%), Positives = 159/333 (47%), Gaps = 46/333 (13%) Query: 295 ISGIDLNFRR-ADGSEFTALVNATAIPSRDNSKLISRTVIYDISER-KRAEEEIEALNAD 352 IS + +N RR ADG A V D L+ ++ SER + A ++ E + Sbjct: 209 ISVLIVNARRLADGLPLAARVKG-----HDEISLLD-DALHRSSERLQEASQQSEQYRSQ 262 Query: 353 LERQAQHLHNVNKEL-------ESFSYSVSHDLRAPLRAISGYAM--------------- 390 LER+A+ L +N +L E F YSVSHDLR+PL + G++ Sbjct: 263 LERRARELTELNADLLQQTQDNEMFIYSVSHDLRSPLVNLQGFSKEIGHATTDLLNAVQA 322 Query: 391 --ILEEDYAH---AIDEKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQRFSMDE 445 + + D A + + + L+ I+ V + +I+ +L+L+++ E M+ Sbjct: 323 LPVPDADKAKLRSVVADDIQPALRFIQNAVTRSAGIIDSMLRLSRAGRVEYQPVMLDMNV 382 Query: 446 LVAQVVAGLQQE--NPGVIFDV-PRLEGAVANRGLIAQVWENLLSNAVKFSSKSEQPRVC 502 + ++VA + + G + +V P L A + I QV NL+ NAV + + R+ Sbjct: 383 IAQRIVAAMSGSIRDKGAVVEVAPELPPAFGDPTAIEQVLGNLVGNAVNYLDPARPGRIT 442 Query: 503 VT-------MQANADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHRQEEYAGTGIGLALVQ 555 + + VY V DNG+G Y HK+F FQRLH G GIGLALV+ Sbjct: 443 IDHLREEGGAATGPETNVYVVRDNGLGIPPAYMHKMFIAFQRLH-GNAAPGEGIGLALVK 501 Query: 556 RIVVRHTGRVWAESKPREGASFYFALPRKGVLP 588 R+V RH GR+W ES +G+SFY ALP + P Sbjct: 502 RVVERHGGRIWVESTEGQGSSFYVALPARPPAP 534 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 173/688 (25%), Positives = 288/688 (41%), Gaps = 131/688 (19%) Query: 16 IFFLLALLLSLGVAAFSYHSVRDFERRAVWLQHSYTVLNKLEEANSTLRDTVSSSRGFAL 75 I F +A+L + +A F+Y + + A + H+ V +L+ STL+D +S RG+ L Sbjct: 21 IGFAVAILAVVLIALFTYEASVSRGQAANAVSHTMKVREQLQSLVSTLKDAETSQRGYLL 80 Query: 76 SGEQEYRNNFESGVRHVNALLQDLRRLLSDNPRQAGLLGQTEDLVMQRLTLSRQLMELSQ 135 +G + Y + + + + LR LL+DNP Q L Q E + +L + ++L + Sbjct: 81 TGTESYLSPYNQARAALPGEIARLRALLADNPDQLQRLSQIEGITNDKLQELAETIDLRR 140 Query: 136 EEGRARVL------EGKELGERIRTGFEQMKGNENALLATRAHDTAMSANLTIFMVISGS 189 + A L GK +R+RT +M+G E LLA R D + + + + GS Sbjct: 141 KGDAAAALAVVQSDRGKMSMDRVRTLAREMEGEERDLLAARQSDWRDAVSFSTAVAWGGS 200 Query: 190 LLSIALLLLV-------YRKLRKE---------MSRRVEAQQRAQAYSDEIEDL---YNN 230 L + L++ YR+ K+ ++ R++ +QR A D Y N Sbjct: 201 GLLLVLIVAAAMTTSRDYRQREKQAWIRAGQMGLAERLQGEQRLDALGDNTLSFLTAYLN 260 Query: 231 APCG---------------YHSVDETD------------------KRIIKINDTELKWLG 257 A G H++D+ D R + + D +L Sbjct: 261 AQVGAIYLRSDGGDFERFASHALDDADGPRTLHSGQGLLGQAAKLNRAMHVKDVPEDYL- 319 Query: 258 YTREQVVGRMTQADLL-APASA-----ARYE----RELQP--QFLLRREISGIDLNFRRA 305 T VGR +L+ PASA A +E R+++P + LL R I + R + Sbjct: 320 -TISSAVGRRQPRELMVVPASADGMVQAVFELGFLRQVRPEEEELLARLSDQIAIAVRSS 378 Query: 306 -DGSEFTALVNATAIPSRD-----------NSKLISRTVIYDISERK--RAEEEIEALNA 351 D + L+ T S + N +L + S+ + + E+E NA Sbjct: 379 KDRTRLEELLEETQRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAELEETNA 438 Query: 352 DLERQAQ---------------------HLHNVNKELESFSYSVSHDLRAPLRAISGYAM 390 LE Q Q L N+ F ++SH+LR PL + A Sbjct: 439 QLEEQTQLLELQKDDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAK 498 Query: 391 ILEEDYAHAIDEKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTL--QRFSM----D 444 +L ++ + ++ Q I + ALIND+L L+K G+L + + F + D Sbjct: 499 LLADNKQGNLSDEQVRFAQTISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLAD 558 Query: 445 ELVAQVVAGLQQENPGVIFDVP-----RLEGAVANRGLIAQVWENLLSNAVKFSSKSEQP 499 EL A QQ+ G +V R+E + G Q+ +NLLSNA+KF+ K E Sbjct: 559 ELSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLG---QILKNLLSNAIKFTEKGE-- 613 Query: 500 RVCVTMQANADEYV-YGVHDNGVGFDMRYAHKLFGTFQR----LHRQEEYAGTGIGLALV 554 V + + +A + + V D G+G +F F++ HR+ Y GTG+GL++ Sbjct: 614 -VSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRK--YGGTGLGLSIS 670 Query: 555 QRIVVRHTGRVWAESKPREGASFYFALP 582 + + G + S+ EG+ F +LP Sbjct: 671 RDLAHLLGGDIRVTSRLGEGSIFTLSLP 698 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 117/245 (47%), Gaps = 29/245 (11%) Query: 355 RQAQHLHNVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRN 414 RQA + + E F ++SH+LR PL AI G+ L D++ A ++ + LQVI RN Sbjct: 41 RQADSVTRLKDE---FLATLSHELRTPLNAIVGWTQYLLNDHSDA--DRLVKGLQVIERN 95 Query: 415 VRKMDALINDLLKLAKSTTGELTLQRFSMDELVAQVVAGLQQENPGVIFDVPRLEGAVAN 474 R ++ DLL +++ G+L L+ MD L + + P L A+ Sbjct: 96 ARLQAQMVEDLLDMSRMLAGKLRLETRPMD-LASVAEEAIAAVRPAAEARQIELHPALGQ 154 Query: 475 RGLI-------AQVWENLLSNAVKFSSKSEQPRVCVTMQANADEYVYGVHDNGVGFDMRY 527 G+I QV NLL NA+KF+ + Q RV ++++ + D V DNG G + Sbjct: 155 GGVILGDPARLQQVVWNLLMNAIKFTPR--QGRVSLSLRQHDDTVALEVSDNGRGIKGEF 212 Query: 528 AHKLFGTFQRLHRQEEY---------AGTGIGLALVQRIVVRHTGRVWAESK-PREGASF 577 +F F QE+ +G G+GLA+ + +V H G++ A S P GA+F Sbjct: 213 LGSVFDRFT----QEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMGAAF 268 Query: 578 YFALP 582 LP Sbjct: 269 TVTLP 273 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 10/222 (4%) Query: 369 SFSYSVSHDLRAPLRAISGYAMILEEDYAHAIDEKGREQLQVIRRNVRKMDALINDLLKL 428 S ++SHDLR PL ++ G A +L + +D+ R + I +KM L+N+LL + Sbjct: 710 SLLSAISHDLRTPLTSLVGSADVLAANAR--LDDDARAMARTISEQSQKMVGLMNNLLDM 767 Query: 429 AKSTTGELTLQR--FSMDELVAQVVAGLQQENPGVIFDV---PRLEGAVANRGLIAQVWE 483 A+ G +TL R +++EL + L + G D P L + L+ +V Sbjct: 768 ARLQAGVVTLNRQWNALEELAGSALRLLAKALEGRQVDTRIAPELPLLRVDAVLLERVLA 827 Query: 484 NLLSNAVKFSSKSEQPRVCVTMQAN--ADEYVYGVHDNGVGFDMRYAHKLFGTFQRLHRQ 541 NL+ NA+K+S + ++ A + V D G GF F F R + Sbjct: 828 NLVENAIKYSPPGTPIGISAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAFEKFTRGDNE 887 Query: 542 EEYAGTGIGLALVQRIVVRHTGRVW-AESKPREGASFYFALP 582 G G+GLA+ + I+ H GR+W A + +GA+ F LP Sbjct: 888 SATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLP 929 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,663,699 Number of extensions: 66259 Number of successful extensions: 378 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 333 Number of HSP's successfully gapped: 33 Length of query: 600 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 509 Effective length of database: 1,188,985 Effective search space: 605193365 Effective search space used: 605193365 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)