BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0137.p (216 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 437 e-124 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 145 3e-36 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 132 2e-32 gi|300312077|ref|YP_003776169.1| response regulator containing a... 125 3e-30 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 122 2e-29 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 437 bits (1124), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG Sbjct: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK Sbjct: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 Query: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA Sbjct: 121 HGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 Query: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK Sbjct: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGIATPDK 216 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 145 bits (365), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 8/205 (3%) Query: 5 IMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNGL 64 IML DDH LVR G++A L +PG+EVV EA E + + DL L+DI M+G+NG+ Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 65 EALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGRQ 124 E +P I L+LSM+ EYVMQ++ AGA GY+ KD+ + ++ A+ V+ G Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 125 YLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIE 184 Y + ++R+ + Q P E+LT R+RE+L IA G + K+IA +L++S +T+E Sbjct: 134 YYSAALARQ--------LTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVE 185 Query: 185 THRAQLMERLDIRDVPGLVRYAIRT 209 THR + +L+I L+++A+ + Sbjct: 186 THRLNIKRKLNIDGQAELIKFAVES 210 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 70/211 (33%), Positives = 127/211 (60%), Gaps = 5/211 (2%) Query: 2 LTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGM 61 +T+I++ DDHA+VR+G+ ++ +P +E+ GEAS E I ++ D+VLLDIAM Sbjct: 1 MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60 Query: 62 NGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKH 121 +G+E L++++ E P + LMLSM+ Y +Q L +GA+GY+ K++ ATEL A+ + Sbjct: 61 SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120 Query: 122 GRQYLDSHISREALDNYMKRVAQNGTPV-EVLTPRQREILQLIAEGNNTKEIAYQLNVSA 180 G +Y IS + + P+ E L+ R+ EI + +G +IA +L +S Sbjct: 121 GHKY----ISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSV 176 Query: 181 KTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211 KT+ T+R+++++++ + + ++ YAI+ + Sbjct: 177 KTVSTYRSRVLQKMSMTNNADIIYYAIKNNL 207 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 128/209 (61%), Gaps = 4/209 (1%) Query: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 ++++ADDHA+VR G++ + + V G A++G E I++ + D++LLDI + NG Sbjct: 10 KVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRNG 69 Query: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 ++ L+++R E P + L+LS++ ++Y ++AL AGA G+L K +A EL A+ + GR Sbjct: 70 IDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASGR 129 Query: 124 QYLDSHISREALDNYMKRVAQNGTPV-EVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 +Y+ +++E L N + + TP+ E L+ R+ + + +IA G +IA +L +S KT Sbjct: 130 KYVSPSLAQE-LANQIG--FDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKT 186 Query: 183 IETHRAQLMERLDIRDVPGLVRYAIRTGI 211 I +R++++ ++ +R L YA++ + Sbjct: 187 ISMYRSRVLSKMKMRHNAELTHYALKNAL 215 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 117/218 (53%), Gaps = 10/218 (4%) Query: 1 MLTRIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKG 60 M RI+L DDH L RSGI+ LL P ++VVGEA DG + ++ QL+PD+VL+D+ M G Sbjct: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 Query: 61 MNGLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVK 120 ++GLEA++ + + P LMLS+ + + AL+ GA GYL K+ A L +++ Sbjct: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 Query: 121 HGRQYLDSHIS-------REALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIA 173 G + ++ R N A+ P + LT R+R + IA G + KEIA Sbjct: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAE---PTDKLTARERATMVCIARGQSNKEIA 177 Query: 174 YQLNVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTGI 211 L V+ T++ H L+ +L + + YA+ G+ Sbjct: 178 RSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 638,020 Number of extensions: 24635 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 19 Length of query: 216 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 135 Effective length of database: 1,236,335 Effective search space: 166905225 Effective search space used: 166905225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)