BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0136.p (163 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311884|ref|YP_003775976.1| two component response regulato... 275 2e-75 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 84 5e-18 gi|300311809|ref|YP_003775901.1| two component response regulato... 77 6e-16 gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 56 1e-09 gi|300312320|ref|YP_003776412.1| response regulator protein [Her... 55 3e-09 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 275 bits (702), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/149 (95%), Positives = 145/149 (97%) Query: 11 MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYASRKDLHP 70 MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYA R+DLHP Sbjct: 1 MDIEQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHP 60 Query: 71 YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 130 YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST Sbjct: 61 YLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKST 120 Query: 131 DPKEFMGTVADTGIYWRNRNRPARGDEPA 159 DPKEFMGTV DTGIYWRNRNRPAR +E A Sbjct: 121 DPKEFMGTVVDTGIYWRNRNRPARNEEGA 149 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 84.3 bits (207), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 71/130 (54%) Query: 17 DIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYASRKDLHPYLILLD 76 I++VD SPE EL R L KL WF DAE A + F + + P LILL+ Sbjct: 5 SILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCLILLE 64 Query: 77 LNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFM 136 LP M G + L +++++A T +PVVMF++S D D ++ GAN Y+VK D + FM Sbjct: 65 PRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDARAFM 124 Query: 137 GTVADTGIYW 146 V+ T W Sbjct: 125 ELVSQTVRRW 134 >gi|300311809|ref|YP_003775901.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 77.4 bits (189), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 14 EQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYASRKDLHPYLI 73 + +IILV+D A L L L + D + A ++ F + SR +L ++ Sbjct: 5 QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQ-RSRTELQQLVV 63 Query: 74 LLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPK 133 LLD+N+P ++G + L+ +K++ S IPV+M +++DD R+I + YE G N Y+ K + + Sbjct: 64 LLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPVEYE 123 Query: 134 EFMGTVADTGIYWRNRNRPA 153 +F+ + G + + P Sbjct: 124 DFIEAIRRLGFFLQVVKLPG 143 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 1/146 (0%) Query: 18 IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYASRKDLHPYLILLDL 77 I++++ + E EL R AL L W+ +A+ A + L P LILLD Sbjct: 6 ILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARL-PDLILLDP 64 Query: 78 NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 137 + +G DF+ +K+ T IPVV+F SD ++ E GA+ Y++K ++M Sbjct: 65 GMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAPQYMQ 124 Query: 138 TVADTGIYWRNRNRPARGDEPARSTP 163 V + W R G AR P Sbjct: 125 AVVECAQRWARPRRRRSGSGAARRKP 150 >gi|300312320|ref|YP_003776412.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 341 Score = 55.1 bits (131), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%) Query: 9 PSMDIEQYDI--ILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYASRK 66 P++ ++Y I +LVDD P V E R AL + D F AEE E Sbjct: 13 PALPADEYKIMVLLVDDQPMVGEAIRRALANEPHID----FHFCTRAEEALTVAERT--- 65 Query: 67 DLHPYLILLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYV 126 P +IL DL +P + G ++ +++A ++P+++ SS DD ++ GAN Y+ Sbjct: 66 --RPTVILQDLVMPGVDGMTLVRQYRASAVLVNVPIIVLSSRDDAVVKRDAFAGGANDYM 123 Query: 127 VKSTDPKEFMGTV 139 VK D E + + Sbjct: 124 VKLPDVIELVARI 136 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 400,917 Number of extensions: 12558 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 5 Length of query: 163 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 85 Effective length of database: 1,250,540 Effective search space: 106295900 Effective search space used: 106295900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)