BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0135.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding prote...   421   e-119
gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding prote...   191   3e-50

>gi|300311883|ref|YP_003775975.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 225

 Score =  421 bits (1082), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/211 (97%), Positives = 208/211 (98%)

Query: 1   METSIRRMLSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVHEGLLK 60
           METSIRRML+KSIWAQALTEEQLARVE EVVSRKIPAGGYVCRKGD V HWIGVHEGLLK
Sbjct: 1   METSIRRMLAKSIWAQALTEEQLARVETEVVSRKIPAGGYVCRKGDAVTHWIGVHEGLLK 60

Query: 61  MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLWLLDNS 120
           MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPR+YDVVALRESELLYMPKATY+WLLDNS
Sbjct: 61  MSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRESELLYMPKATYIWLLDNS 120

Query: 121 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE 180
           IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE
Sbjct: 121 IPFNRFLVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEE 180

Query: 181 VGNLSGTSRQRANQALQVLEKAGLLKVDYGS 211
           VGNLSGTSRQRANQALQVLEKAGLLKVDYGS
Sbjct: 181 VGNLSGTSRQRANQALQVLEKAGLLKVDYGS 211


>gi|300313985|ref|YP_003778077.1| cyclic nucleotide-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score =  191 bits (486), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 140/207 (67%)

Query: 7   RMLSKSIWAQALTEEQLARVEAEVVSRKIPAGGYVCRKGDPVAHWIGVHEGLLKMSSVSP 66
           ++L +  W  AL  E  A   A     +  A  +V R+G+   +WIGVHEGL+K++  + 
Sbjct: 3   QLLQQYDWFAALASEHRALAAATTQRVRYAADAFVARRGELSQYWIGVHEGLIKLAVYNI 62

Query: 67  EGKTVSFAGMANGGWLGEGSLLKDEPRRYDVVALRESELLYMPKATYLWLLDNSIPFNRF 126
           +G++ + +G+  GGW GEGS++K EPRRYDV+A+R S++L +P  T+  L+  S+PFN F
Sbjct: 63  DGRSSTLSGVPEGGWCGEGSVIKREPRRYDVIAIRASQILLVPADTFHCLMAESLPFNAF 122

Query: 127 LVTQLNERLALFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLNLQISQEEVGNLSG 186
           ++ QLNER+  FI+ V+ +R+L+ DARVA+ +A LF+P L P     L++SQEE+G L+G
Sbjct: 123 VIGQLNERMGQFIATVQNERLLDVDARVAQAIAQLFHPMLYPRTSKVLELSQEEIGLLTG 182

Query: 187 TSRQRANQALQVLEKAGLLKVDYGSXR 213
            SRQR NQA++ L + GL+++ Y S R
Sbjct: 183 LSRQRVNQAMRRLAELGLVEISYQSIR 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 697,947
Number of extensions: 28679
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)