BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0132.p (289 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 573 e-165 gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 264 5e-72 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 225 3e-60 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 224 8e-60 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 220 1e-58 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 573 bits (1476), Expect = e-165, Method: Compositional matrix adjust. Identities = 277/289 (95%), Positives = 283/289 (97%) Query: 1 MKRHLSSEILPAGLPPVTSPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTDISFD 60 MKRHLSSEILP+GLPPV SPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTDISFD Sbjct: 5 MKRHLSSEILPSGLPPVASPDDEAPAVAANGRRIGEVILDLQNISLSFGGVKALTDISFD 64 Query: 61 VREHEIRAIIGPNGAGKSSMINVINGVYHPQKGSILYRGQPRLGMHPSSIARQGIARTFQ 120 VREHEIRAIIGPNGAGKSSMINVINGVYHPQKG ILYRGQPR GMHPS+IARQGIARTFQ Sbjct: 65 VREHEIRAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIARTFQ 124 Query: 121 NIALFKGMTVLDNIMTGRNTKMRSGLFSNALWWGAARNEEIEHRRKVEEVIDFLEIQHIR 180 NIALFKGMTVLDNIMTGRNTKMRSGL SNA+WWGAARNEEIEHRRKVE+VIDFLEIQHIR Sbjct: 125 NIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQHIR 184 Query: 181 KTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTI 240 KTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTI Sbjct: 185 KTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTI 244 Query: 241 VLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMSNPEVIKAYLGTSH 289 VLIEHDMGVVMDISDRVVVLDYGKKIGDGTP+EVM N +VIKAYLGTSH Sbjct: 245 VLIEHDMGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH 293 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 264 bits (675), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 131/253 (51%), Positives = 177/253 (69%), Gaps = 2/253 (0%) Query: 38 ILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGSILY 97 +L L+ +SLSFGGV+AL + + E EI A+IGPNGAGKSS++NV++G+Y P +G++ Sbjct: 8 VLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPTQGTVSL 67 Query: 98 RGQPRLGMHPSS-IARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLFSNALWWGAA 156 G+ RL P++ + R G+ARTFQN+ALFKG++V DNI+ GR MR+ + G A Sbjct: 68 GGR-RLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQIIGLGRA 126 Query: 157 RNEEIEHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAG 216 R E I+ R + E+++ FL+++ + VG LPYGLQKRVELARAL A P +LLLDEPMAG Sbjct: 127 RRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLDEPMAG 186 Query: 217 MNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMS 276 M V EK +M F+ DQF T I+LIEHD+G+V +SDRVVVL +G KI DG P V Sbjct: 187 MTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAPAAVRQ 246 Query: 277 NPEVIKAYLGTSH 289 + VI+AYLG + Sbjct: 247 DAAVIEAYLGVAQ 259 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 225 bits (573), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 110/256 (42%), Positives = 160/256 (62%), Gaps = 1/256 (0%) Query: 34 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 93 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 94 SILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLFSNALWW 153 + G+P P +A+ GIARTFQNI LF MTVL+N+M G + + R +F Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 154 GAARNEEIEHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 213 AAR EE R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 214 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 273 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 274 VMSNPEVIKAYLGTSH 289 V NP VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 224 bits (570), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 109/256 (42%), Positives = 160/256 (62%), Gaps = 1/256 (0%) Query: 34 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 93 + + +L ++++S FGG++AL + + +I +IGPNGAGK++ NVI G+Y P G Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 94 SILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLFSNALWW 153 + G+P P +A+ GIARTFQNI LF MTVL+N+M G + + + +F Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 154 GAARNEEIEHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 213 AAR EE R K ++++DF+ I K L YG Q+R+E+ARALA +P +L LDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 214 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 273 AGMN EK + ++ + + G TI+LIEHD+ ++M + +R+ VLDYGK I +G P + Sbjct: 181 AAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPAD 239 Query: 274 VMSNPEVIKAYLGTSH 289 V NP VI+AYLG H Sbjct: 240 VQKNPAVIEAYLGAGH 255 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/252 (43%), Positives = 167/252 (66%), Gaps = 2/252 (0%) Query: 36 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGSI 95 + +L++ N+S+ FGG+ A+ +S V+E E+ AIIGPNGAGK+++ N I+G Y P G I Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 96 LYRGQPRLGMHPS-SIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLFSNALWWG 154 + G + PS +A+QG+ RTFQNI LFK MTV++N++ ++ ++ + L S L Sbjct: 66 MLDG-ASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTP 124 Query: 155 AARNEEIEHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPM 214 A R E E ++ +D L + + G L YGLQ+RVE+AR + +P +LLLDEP Sbjct: 125 AYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPA 184 Query: 215 AGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEV 274 AG+N +EKQ++ + I + + G ++LIEHDM ++M ISDR++V+++GK I GTP++V Sbjct: 185 AGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQV 244 Query: 275 MSNPEVIKAYLG 286 S+ VIKAYLG Sbjct: 245 RSDERVIKAYLG 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 934,374 Number of extensions: 40734 Number of successful extensions: 529 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 132 Length of query: 289 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 205 Effective length of database: 1,222,130 Effective search space: 250536650 Effective search space used: 250536650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)