BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0129.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311878|ref|YP_003775970.1| amino acid ABC transporter peri...   832   0.0  
gi|300310288|ref|YP_003774380.1| hypothetical protein Hsero_0955...   430   e-121

>gi|300311878|ref|YP_003775970.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/411 (98%), Positives = 408/411 (99%)

Query: 21  DQFIAIPSYRVGPYGTNGQSYYGGYVDYLNYVNLKEGGVNGVKLSWEECETEYNNAKGVE 80
           DQFIAIPSYRVGPYGTNGQSYYGGYVDYLNY+N+KEGGVNGVKLSWEECETEYNNAKGVE
Sbjct: 33  DQFIAIPSYRVGPYGTNGQSYYGGYVDYLNYINIKEGGVNGVKLSWEECETEYNNAKGVE 92

Query: 81  CYERMKNKNQVTHGTAINPMATGISYALIDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFP 140
           CYERMKNKN VTHGTAINPMATGISYALIDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFP
Sbjct: 93  CYERMKNKNPVTHGTAINPMATGISYALIDKTAEDKVPLVMIGYGRTDAVDGSVFPYAFP 152

Query: 141 LVTTYQMQVSAIVKYLAGKNNGSLAGKKIVFLYHDSAYGKEPIVALQAESSIGKFKLVEI 200
           LVTTYQMQVSAIVKYLAGKNNGSLAGKKIVFLYHDSAYGKEPIVALQAE+SIGKFKLVEI
Sbjct: 153 LVTTYQMQVSAIVKYLAGKNNGSLAGKKIVFLYHDSAYGKEPIVALQAEASIGKFKLVEI 212

Query: 201 PVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQTALKAAQKVGYPRDKIVGSWWAGSEE 260
           PVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQTALKAAQKVGY RDKIVGSWWAGSEE
Sbjct: 213 PVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQTALKAAQKVGYARDKIVGSWWAGSEE 272

Query: 261 DTIPAGDAAKGYLSATWNVAGKDVPVIADIDKVVYGAGKGNMQDKNKLGSILYNRGVSAA 320
           DTIPAGDAAKGYLSATWNVAGKDVPVIADIDKVVYGAGKGNMQDKNKLGSILYNRGVSAA
Sbjct: 273 DTIPAGDAAKGYLSATWNVAGKDVPVIADIDKVVYGAGKGNMQDKNKLGSILYNRGVSAA 332

Query: 321 IATVEAVRTAQDKYGKGKVMSGEQVRWGFENLNITDARLKALGATGLLPEIKTSCDNHEG 380
           IATVEAVRTAQ KYGKGKVMSGEQVRWGFENLNITDARLKALGATGLLPEIKTSCDNHEG
Sbjct: 333 IATVEAVRTAQGKYGKGKVMSGEQVRWGFENLNITDARLKALGATGLLPEIKTSCDNHEG 392

Query: 381 SGKVKIQQWDGTKWVLVSDWIEGNKNLIHPLFKASAAKYAKEKGITPACMK 431
           SGKVKIQQWDG+KWVLVSDWIEGNKNLIHPLFKASAAKYAKEKGITPACMK
Sbjct: 393 SGKVKIQQWDGSKWVLVSDWIEGNKNLIHPLFKASAAKYAKEKGITPACMK 443


>gi|300310288|ref|YP_003774380.1| hypothetical protein Hsero_0955
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/411 (53%), Positives = 279/411 (67%), Gaps = 6/411 (1%)

Query: 17  AQASDQFIAIPSYRVGPYGTNGQSYYGGYVDYLNYVNLKEGGVNGVKLSWEECETEYNNA 76
           A+A +QF  + SYRVGPY   G  ++GG++DYLN VNL++GGV GVKL+WEE ET+Y   
Sbjct: 24  ARADEQFFPLQSYRVGPYAAGGTGFFGGFIDYLNLVNLRDGGVGGVKLTWEEGETQYEVE 83

Query: 77  KGVECYERMKNKNQVTHGTAINPMATGISYALIDKTAEDKVPLVMIGYGRTDAVDGSVFP 136
           +GVE YER+K +  +      NP++ GI+YAL+D+   DKVPL+ I +GRTD  DG VF 
Sbjct: 84  RGVEVYERLKQRPNIA---TWNPLSVGIAYALLDRVTADKVPLLTINHGRTDTTDGRVFK 140

Query: 137 YAFPLVTTYQMQVSAIVKYLAGKNNGS--LAGKKIVFLYHDSAYGKEPIVALQAESSIGK 194
           Y FPL+     + S IV Y+A K  G+  L GKKIV LYH S YGKE I   +  S    
Sbjct: 141 YIFPLLLNPYSETSGIVNYIASKEGGADKLKGKKIVVLYHGSPYGKETIPIYKLLSEKYG 200

Query: 195 FKLVEIPVAHPGNEQGAQWLRIRQENPDYVIFWGWGVMNQTALKAAQKVGYPRDKIVGSW 254
           F L +I V HPGN+Q AQWL IR+  PDYV+  GWGVMN  ALK AQK G+P D+I+G+ 
Sbjct: 201 FSLQQIEVPHPGNDQQAQWLAIRRAKPDYVVLRGWGVMNPVALKTAQKSGFPADRIIGNV 260

Query: 255 WAGSEEDTIPAGDAAKGYLSATWNVAGKDVPVIADIDKVVYGAGKGNMQDKNKLGSILYN 314
           W+ SEED IPAGDAAKGY++ T   AG   PV+ +I K VYGAGKGN+QD  ++GS+ +N
Sbjct: 261 WSNSEEDVIPAGDAAKGYVAITTVAAGAQYPVLQEIQKTVYGAGKGNLQDPKRIGSVYHN 320

Query: 315 RGVSAAIATVEAVRTAQDKYGKGKVMSGEQVRWGFENLNITDARLKALGATGLLPEIKTS 374
            GV   I  VEA+R AQ ++GK + ++G+++RWG ENLNI  AR  ALGA GL   I  +
Sbjct: 321 LGVLNGILNVEAIRIAQARFGK-RTLTGDEIRWGLENLNIDQARTAALGAKGLFHSIHVT 379

Query: 375 CDNHEGSGKVKIQQWDGTKWVLVSDWIEGNKNLIHPLFKASAAKYAKEKGI 425
            DNHEG G V  QQWDG +W +VSDWI  +  L+ P+ + SA  YAKEK I
Sbjct: 380 WDNHEGDGLVAFQQWDGKQWHVVSDWIAPDWKLLRPIIEKSALAYAKEKNI 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,418,165
Number of extensions: 62151
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)