BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0128.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 557 e-160 gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC t... 256 2e-69 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 221 7e-59 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 200 1e-52 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 198 4e-52 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 557 bits (1436), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/286 (97%), Positives = 279/286 (97%), Gaps = 1/286 (0%) Query: 1 MNATPIQTSAAPSAATA-AVAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANG 59 MNATPIQTSAA +A VAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANG Sbjct: 3 MNATPIQTSAAVPSAAPATVAKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANG 62 Query: 60 AGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLT 119 AGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLT Sbjct: 63 AGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLT 122 Query: 120 VEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMA 179 VEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMA Sbjct: 123 VEENLLTGAYTRGISNAEVKHELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMA 182 Query: 180 KPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENG 239 KPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENG Sbjct: 183 KPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENG 242 Query: 240 RVVMEGAASELADNEDVKEFYLGVSGGGRKNFRDMKFYRRRKRWLA 285 RVVMEGAASELADNEDVKEFYLGVSG GRKNFRDMKFYRRRKRWLA Sbjct: 243 RVVMEGAASELADNEDVKEFYLGVSGAGRKNFRDMKFYRRRKRWLA 288 >gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 256 bits (653), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 128/243 (52%), Positives = 169/243 (69%) Query: 20 AKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGD 79 A L I IEV Y +L L+ VSL+V G+I ALLGANGAGKSTTLKA+SNLL A+RG Sbjct: 3 APLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQRGQ 62 Query: 80 VTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVK 139 V G I + G V R +P +LV++G+ QV+EGRHCF LTVEENLLTG ++ Sbjct: 63 VRAGHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTVLR 122 Query: 140 HELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVE 199 LE+IY +FP+L RR+S +G SGGEQQM AIGRA++++P +++LDEPSMGLAP++V Sbjct: 123 AALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKVVA 182 Query: 200 EIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEF 259 +IF + LN +E V+ L+AEQN+ VAL+YA +LE+GR V+ A L D++ F Sbjct: 183 DIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDEAQALRQRADIQSF 242 Query: 260 YLG 262 Y G Sbjct: 243 YFG 245 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 221 bits (562), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 123/240 (51%), Positives = 162/240 (67%), Gaps = 8/240 (3%) Query: 23 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 82 L + ++ V Y H+ V KG+SL + EG+I AL+GANGAGKST+L AIS L+ A+RG V Sbjct: 11 LQVEDLAVAYGHIEAV-KGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL- 68 Query: 83 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVKHEL 142 G+ + +M+P+ +V+ GV+QV EGR LTVEENL GAYTR + V +L Sbjct: 69 ----LHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDG-VARDL 123 Query: 143 EKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 202 E +Y FP LK R +G SGGEQQM AIGRA+MAKP ++LLDEPSMGLAP I++EIF Sbjct: 124 EWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIF 183 Query: 203 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 262 IV+++N K ++ LL EQN ALR A GY+LE G++V+E + + L N V E YLG Sbjct: 184 RIVQEIN-KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 200 bits (508), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 106/243 (43%), Positives = 158/243 (65%), Gaps = 10/243 (4%) Query: 23 LAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDVTK 82 L I+N+ Y V VL G+S++VP+GK+V L+G+NGAGK+TT++AIS ++ + G+VT Sbjct: 2 LTISNLHAAYGKV-EVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 83 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAY---TRGISNAEVK 139 G G+ + + + + + G+ EGR F ++V +NLL GA+ TR ++ Sbjct: 61 G-----GKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIA 115 Query: 140 HELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVE 199 H+LE+ + FPRLK R+ +G SGGEQQM A+ RA+M P +ILLDEPSMGLAP +V+ Sbjct: 116 HDLERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVD 175 Query: 200 EIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEF 259 E+F I+ L ++ V+ LL EQ AL AD+GY+LENG++ + G A +L ++ VK Sbjct: 176 EVFRIIVRLK-EQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAA 234 Query: 260 YLG 262 YLG Sbjct: 235 YLG 237 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 198 bits (504), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 113/249 (45%), Positives = 157/249 (63%), Gaps = 15/249 (6%) Query: 21 KALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGDV 80 K L + ++ Y V VL G+ L V +GKIV ++G NGAGK+T L AI +L Sbjct: 4 KVLEVRDLSAAYGKV-EVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLP------ 56 Query: 81 TKGSIEFRGERVDRMTPN--DLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEV 138 ++G++ F G R +P ++V G+ V E R F + +E+NL+ GA+ R + Sbjct: 57 SRGAMAFDG--AIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQR-YRTGQR 113 Query: 139 KH--ELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQ 196 H LE++Y FPRL+ RR Q+G SGGE+QM A+GRA+MAKP +++LDEPS+GLAP Sbjct: 114 DHAATLEEVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPL 173 Query: 197 IVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDV 256 IV EIF I+ +L + VS LL EQN AL+ AD+GY+LENG + M G AS+LA + V Sbjct: 174 IVREIFRIIAELR-RRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRV 232 Query: 257 KEFYLGVSG 265 E YLG+SG Sbjct: 233 IEAYLGLSG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 813,110 Number of extensions: 32363 Number of successful extensions: 468 Number of sequences better than 1.0e-08: 118 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 128 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)