BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0126.p (362 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic ami... 630 0.0 gi|300311478|ref|YP_003775570.1| succinyldiaminopimelate aminotr... 98 9e-22 gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Her... 95 1e-20 gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent a... 94 2e-20 gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic ami... 82 1e-16 >gi|300311875|ref|YP_003775967.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 431 Score = 630 bits (1624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/346 (89%), Positives = 318/346 (91%), Gaps = 7/346 (2%) Query: 16 VSSSPATSSDAFPVSFPRIERLPPYVFNITAELKXDFPKVDFDPDSEAIVTIGSKEGLAH 75 V+ P T + PR+ R + + E VDFDPDSEAIVTIGSKEGLAH Sbjct: 92 VAQRPDTHGYSSSKGIPRLRRAIAHWYRSRYE-------VDFDPDSEAIVTIGSKEGLAH 144 Query: 76 LMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAVRESYPKPK 135 LMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAVRESYPKPK Sbjct: 145 LMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAVRESYPKPK 204 Query: 136 MMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAR 195 MMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAR Sbjct: 205 MMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAR 264 Query: 196 EVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQ 255 EVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQ Sbjct: 265 EVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQ 324 Query: 256 SCVEEIRANYEKRRNVLVKGLHEAGWMVDVPKASMYIWARIPEPYRQFGSLEFSRILLEQ 315 SCVEEIRANYE+RRNVLVKGLHEAGWMVDVPKASMYIWARIPEPYRQFGSLEF+RILLEQ Sbjct: 325 SCVEEIRANYERRRNVLVKGLHEAGWMVDVPKASMYIWARIPEPYRQFGSLEFARILLEQ 384 Query: 316 AKVCVSPGIGFGEYGDEYVRFALIENESRIRQAIRGIKTMFKNAKG 361 AKVCVSPGIGFGEYGDEYVRFALIENESRIRQAIRGIK MFKNAKG Sbjct: 385 AKVCVSPGIGFGEYGDEYVRFALIENESRIRQAIRGIKAMFKNAKG 430 Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 41/59 (69%), Positives = 44/59 (74%), Gaps = 10/59 (16%) Query: 1 MTQSADSRDPSRTP----------AVSSSPATSSDAFPVSFPRIERLPPYVFNITAELK 49 MTQSADSRDPSR+P A ++SP DAFPVSFPRIERLPPYVFNITAELK Sbjct: 1 MTQSADSRDPSRSPDASAASSASAASAASPVVPPDAFPVSFPRIERLPPYVFNITAELK 59 >gi|300311478|ref|YP_003775570.1| succinyldiaminopimelate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 420 Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/284 (26%), Positives = 137/284 (48%), Gaps = 16/284 (5%) Query: 49 KXDFPKVDFDPDSEAIVTIGSKEGLAHLMLATLDK---GDTVLVPNPSYPIHIYGAVIAG 105 + D P+ D P +E + GS+E L L +D G V+ PNP Y I+ A +AG Sbjct: 98 RYDIPRPD--PATEILPVNGSREALFSLTQTVVDPTRPGALVMCPNPFYQIYEGSAYLAG 155 Query: 106 ANIRSVRMSPGVDFFDELERAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREH 165 A V P +F + + ++ + + +++ + P NPT + LE ++ + L+ + Sbjct: 156 AQPYFVNSDPKRNFAPDFSQVPQDVWERVQLLFVCSPGNPTGAVLTLEDWKELFALSDRY 215 Query: 166 QILVVHDLAYADITFDGWKAPSIMQVPGAREVA------VEFFTLSKSYNMAGWRIGFMV 219 ++ D Y++I F+ + P + + AR + + F +LSK N+ G R GF+ Sbjct: 216 GFVIASDECYSEIYFN--EDPPLGGMQAARLLGRDYRRLISFSSLSKRSNVPGMRSGFVA 273 Query: 220 GNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYEKRRNVLVKGLHEA 279 G+A ++ ++YH +Q A++ A + D++ V+ A Y + + + L E Sbjct: 274 GDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQ-DETHVQGNIAKYVTKFSQVTPLLQEV 332 Query: 280 GWMVDVPKASMYIWARIPEPYRQFGSLEFSRILLEQAKVCVSPG 323 V +P A+ Y+WA++ + EF++ L + V V PG Sbjct: 333 -LEVALPDAAFYLWAKV-DKLVNISDTEFAQRLYAEYNVTVLPG 374 >gi|300311409|ref|YP_003775501.1| aspartate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 409 Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 139/292 (47%), Gaps = 12/292 (4%) Query: 68 GSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDFFDELERAV 127 G+ E + + A L+ GD VLVP+P YP+ ++G + ++ Sbjct: 103 GASELIVMSVNALLNTGDEVLVPSPDYPLWTAAVSLSGGTPVHYVCDEQQGWQPDIADIK 162 Query: 128 RESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPS 187 ++ P K +++ P+NPT +E + +++LAR+HQ++++ D Y + +DG S Sbjct: 163 KKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQHQLIILADEIYDKVLYDGNTHTS 222 Query: 188 IMQVPGAREVA-VEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSF-----T 241 + + A +V + F LSK+Y G+R G+MV + A I+ + S Sbjct: 223 LASL--ADDVLFITFNGLSKNYRSCGYRAGWMVVSGEKKHARDYIEGLNMLASMRLCANA 280 Query: 242 PVQVAAIAALEGDQSCVEEI--RANYEKRRNVLVKGLHEA-GWMVDVPKASMYIWARI-P 297 P Q A AL G QS + + + K+R++ + L + G PK+++Y++ R+ P Sbjct: 281 PGQFAIQTALGGYQSINDLVGPQGRLTKQRDLAHQLLTDIPGVSCVKPKSALYMFPRLDP 340 Query: 298 EPYRQFGSLEFSRILLEQAKVCVSPGIGFGEYGDEYVRFALIENESRIRQAI 349 E Y EF+ LL + KV + G GF ++ R + N + +++ Sbjct: 341 EIYPIKDDQEFAYELLAEEKVLIVQGTGFNCPTPDHFRVVFLPNTDDLTESM 392 >gi|300312316|ref|YP_003776408.1| pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 385 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 11/300 (3%) Query: 57 FDPDSEAIVTIGSKEGLAHLMLATLDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPG 116 +DP SE VT G+ +G+ +L + GD V+V P Y ++ +AG V+M G Sbjct: 86 YDPVSEITVTAGATQGILTSVLCAVHPGDEVIVIEPVYDCYVPAIELAGGVPVFVQMEVG 145 Query: 117 VDFF----DELERAVRESYPKPKMMILGFPSNPTAQCVELEFFERVVKLAREHQILVVHD 172 + D+++ AV PK +M+++ P NPT + + + R IL++ D Sbjct: 146 AQGYSIPWDKVKAAVT---PKTRMIMVNTPHNPTGSVMRAADVAALADIVRGTDILILSD 202 Query: 173 LAYADITFDGWKAPSIMQVPGAREVAVEFFTLSKSYNMAGWRIGFMVGNARLVAALARIK 232 Y + +DG S+ + P E + + K+Y++ GW++G++ A L A ++ Sbjct: 203 EVYEHMVYDGQPHESLARHPELAERSFINSSFGKTYHVTGWKVGYVAAPAALTAEFRKVH 262 Query: 233 SYHDYGSFTPVQVAAIAALEGDQSCVEEIRANYEKRRNVLVKGLHEAGWMVDVPKASMYI 292 ++ + TPVQ +AA D + ++ A Y+ +R++ GL + + +P Y Sbjct: 263 QFNVFTVNTPVQY-GLAAYMKDPAPYLDLPAFYQHKRDLFRTGLANTRFEL-LPSQGTYF 320 Query: 293 WARIPEPYRQFGSLEFSRILLEQAKVCVSPGIGFGEYGDE--YVRFALIENESRIRQAIR 350 EF + L + V P F E VRF + + ++ A+ Sbjct: 321 QCVKYGAISALPEAEFCKWLTSEIGVAAIPVSAFYNTPRESGIVRFCFAKKDETLQLALE 380 >gi|300312878|ref|YP_003776970.1| aspartate/tyrosine/aromatic aminotransferase [Herbaspirillum seropedicae SmR1] Length = 393 Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 134/285 (47%), Gaps = 13/285 (4%) Query: 81 LDKGDTVLVPNPSYPIHIYGAVIAGANIRSVRMSPGVDF-FDELERAVRESY-PKPKMMI 138 +++ VL+P+PSYP + + +A R+ ++ G + F + VRE + + ++ Sbjct: 114 VERDSEVLMPDPSYPCNRH--FVAAFEGRAKLIASGPEHRFQLSAQMVREHWGSATRGVL 171 Query: 139 LGFPSNPTAQCVELEFFERVVKLAREHQILVVHDLAYADITFDGWKAPSIMQVPGAREVA 198 L PSNPT + + +V R+ + D Y ++++G AP G V Sbjct: 172 LASPSNPTGTSILPDELRAIVGEVRQRGGFTIVDEIYQGLSYEG--APFSALSLGDDVVV 229 Query: 199 VEFFTLSKSYNMAGWRIGFMVGNARLVAALARIKSYHDYGSFTPVQVAAIAALEGDQ-SC 257 + F SK +NM GWR+G++V LV + ++ + + Q AA+A + Sbjct: 230 INSF--SKYFNMTGWRLGWLVLPPALVPQVEKLAQNLLICASSIAQHAAVACFTPQTLAL 287 Query: 258 VEEIRANYEKRRNVLVKGLHEAGWMVDV-PKASMYIWARIPEPYRQFGSLEFSRILLEQA 316 EE +A +++RR+ +V L G+ V V P + Y++A L +L +A Sbjct: 288 YEERKAEFKRRRDYIVPALESLGFTVPVMPDGAFYVYADCSALADDADQLSLD--MLNEA 345 Query: 317 KVCVSPGIGFGEY-GDEYVRFALIENESRIRQAIRGIKTMFKNAK 360 V + PG+ FG + Y+R + + +++A+ ++ F+ + Sbjct: 346 GVVLVPGLDFGPFTARRYIRLSYATSMENLQEAVARLRVFFEKRR 390 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,039,395 Number of extensions: 41785 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 11 Length of query: 362 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 276 Effective length of database: 1,212,660 Effective search space: 334694160 Effective search space used: 334694160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)