BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0123.p (745 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 1405 0.0 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 451 e-127 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 438 e-124 gi|300311453|ref|YP_003775545.1| signal transduction containing ... 368 e-103 gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodies... 361 e-100 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 1405 bits (3638), Expect = 0.0, Method: Compositional matrix adjust. Identities = 690/745 (92%), Positives = 713/745 (95%) Query: 1 MSTTDAFTAQFGRNAEQLIAVTGIAMSVTLALLGWLMMSSRKRAVRLAQKMTVELRASEE 60 + T AF AQFGRNAE LIA TGIAMS++LALL WLM+SSR RAVRLAQKMT ELRASEE Sbjct: 292 LRTNAAFHAQFGRNAEPLIATTGIAMSLSLALLAWLMVSSRVRAVRLAQKMTAELRASEE 351 Query: 61 QFRAIADCTVNWEVWWGLDGRPRWINHAVRDYTGYTVEECLSMPDFIGSIVHPDDERRIR 120 QFRAIADCTVNWEVWWGLDGRPRWINHAV DYTGYTVEECL+M DFIG+I HP+DE RIR Sbjct: 352 QFRAIADCTVNWEVWWGLDGRPRWINHAVLDYTGYTVEECLAMDDFIGTIAHPEDEPRIR 411 Query: 121 AELARCMDGQKREDVEFRCVRKDGTVFWLSLSSAPIADAQGSFTGFRTSARDITDRKQIE 180 AELARCMDGQKREDVE RCVRKDG+VFWL+LS API DAQG FTGFRTS+RDITDRKQIE Sbjct: 412 AELARCMDGQKREDVELRCVRKDGSVFWLALSCAPIHDAQGRFTGFRTSSRDITDRKQIE 471 Query: 181 AELRISAVAFDSREGMLITDANSKILRVNKAFTEITGYTAEEIVGKHPNLLRSDRHGPAF 240 AELRISAVAFDSREGMLITDANSKILRVNKAFTEITGY+AEEIVGKHPNLLRSDRHGPAF Sbjct: 472 AELRISAVAFDSREGMLITDANSKILRVNKAFTEITGYSAEEIVGKHPNLLRSDRHGPAF 531 Query: 241 FQEMRESVRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDNQVTHYVSTHHDISDRKLA 300 FQEMRES+RRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKD QVTHYVSTHHDISDRKLA Sbjct: 532 FQEMRESIRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVSTHHDISDRKLA 591 Query: 301 EERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTRTCGALLFIDLDHFKTLNDTVGHE 360 EERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRT+TC ALLFIDLDHFKTLNDT+GHE Sbjct: 592 EERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTKTCAALLFIDLDHFKTLNDTIGHE 651 Query: 361 KGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNDTQQEAATQTRTIGEKILAAL 420 KGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLN+ QQEAATQTR IGEKIL AL Sbjct: 652 KGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTRAIGEKILTAL 711 Query: 421 GQTYQLDEVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQT 480 G TYQLD+VEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQT Sbjct: 712 GSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQT 771 Query: 481 AVLERATLEAGLRKAIEGNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPL 540 AVLERATLEAGLRKAI+GNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPL Sbjct: 772 AVLERATLEAGLRKAIDGNQLLLHYQPQVVEGGRVTGAEVLVRWQHPQRGMVPPGDFIPL 831 Query: 541 AEETGLILSLGNWVLETACTQLATWAKRPRMAELSIAVNVSAPQLREHDFVQTVLDIIDR 600 AEETGLILSLGNWVLETAC QLATWA +P+MA+LSIAVNVSAPQLRE DFVQTVLD I+R Sbjct: 832 AEETGLILSLGNWVLETACRQLATWAAQPQMADLSIAVNVSAPQLREPDFVQTVLDTIER 891 Query: 601 TGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQ 660 TGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQ Sbjct: 892 TGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQ 951 Query: 661 LKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGY 720 LKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGY Sbjct: 952 LKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGY 1011 Query: 721 YFCRPVTVEAFEKFAQDRDLHISVA 745 +FCRPVTVEAFEKFAQ+ D S A Sbjct: 1012 FFCRPVTVEAFEKFAQEFDPQFSAA 1036 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust. Identities = 265/658 (40%), Positives = 394/658 (59%), Gaps = 35/658 (5%) Query: 93 TGYTVEECL--SMPDFIGSIVHPDDERRIRAELARCMDGQKREDVEFRCVRKDGTVFWLS 150 TGY E+ L F+ + HP+D +R + CM ++R D+E+R VR DG V W+ Sbjct: 43 TGYLPEDLLLNQRLSFL-ELTHPEDRTLVRNHVDACMRERRRIDIEYRIVRADGAVRWVW 101 Query: 151 LSSAPIADAQGSFTGFRTSARDITDRKQI-----EAELRISAVAFDSREGMLITDANSKI 205 I +A G +D+T+RK+ EAE R ++ ++ EG+ T + Sbjct: 102 ERGVGIYNANGQVEAIEGFLQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTY 161 Query: 206 LRVNKAFTEITGYTAEE--IVGKHPNLLRSDRHGPAFFQEMRESVRRFGKWQGEIWD--- 260 + VN A I GY + E IVG LR H E R+ R + QG + + Sbjct: 162 IAVNPALARIYGYHSPEDLIVG-----LRDISHQLYVEPERRQEFMRLMEEQGSVSNFES 216 Query: 261 --RRKNGEVYPEWLTISA--VKNKDNQVTHYVSTHHDISDRKLAEERIRELAFFDALTRL 316 R++GE+ W++ +A V ++ +++ Y T I++RK E +R A DALT L Sbjct: 217 RVYRRDGEII--WISENARAVYDEAGKLSCYEGTVEAITERKAHEAEMRHQATHDALTGL 274 Query: 317 PNRTLLLDRLKQAIALSLRTRTCGALLFIDLDHFKTLNDTVGHEKGDTLLKQVAQRLLAN 376 PNR +L + L++A+ ++ + A+ F+DLD FK +ND++GH+ GD LLK VAQRL A Sbjct: 275 PNRNMLHEHLQRALRVARQKGALTAVAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQAC 334 Query: 377 VRENDTVARVGGDEFVVVLEGLNDTQQEAATQTRTIGEKILAALGQTYQLDEVEYRTTAS 436 +RE D VAR GGDEFV+VL+ N T+ EA + ++ILAA+ + +Q + E++ TAS Sbjct: 335 LREADMVARQGGDEFVLVLQ--NQTEGEAGIAE--VMQRILAAVARPWQAGDREFQVTAS 390 Query: 437 IGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAI 496 IG + + V+ L+K AD AMY+AKE GRN +FF P M + V R + LR+A+ Sbjct: 391 IGVSRYPADGKDVESLLKHADSAMYRAKEQGRNNFQFFAPWMDSQVSNRLEMLINLRRAL 450 Query: 497 EGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVL 555 + ++ L+YQP++ ++ GR+ GAE L+RW+ PQ+GMVPP FIP AEE GLI+ +G WVL Sbjct: 451 DQDEFKLYYQPKLSLQDGRLIGAEALIRWESPQQGMVPPDRFIPFAEEAGLIVPIGEWVL 510 Query: 556 ETACTQLATWAKRPRMAELSIAVNVSAPQLREH--DFVQTVLDIIDRTGANPRRLKLELT 613 TAC Q W ++ + + +AVN+S QL + DFV VL ++G L+LE+T Sbjct: 511 RTACRQNQAW-QQAGLPPIPVAVNLSPRQLNQSLPDFVAGVLA---QSGLAASWLELEIT 566 Query: 614 ESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLI 673 E++++ + E + + ALK G++ S+DDFGTGYSSLSYL+R P++ LKID+SFVRD++ Sbjct: 567 ENVVMKDAEKSVATLHALKRLGLQISVDDFGTGYSSLSYLRRFPVDALKIDKSFVRDIVR 626 Query: 674 DPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFCRPVTVEAF 731 D + A+I K I++LA L L VIAEGVE + Q +FL + C QGYYF +P+ V F Sbjct: 627 DADSAAIVKAIISLAHILNLRVIAEGVEDEEQHAFLKENACDEVQGYYFGKPMEVAVF 684 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 255/583 (43%), Positives = 349/583 (59%), Gaps = 32/583 (5%) Query: 172 DITDRKQIEAELRISAVAFD-SREGMLITDANSK---ILRVNKAFTEITGYTAEEIVGKH 227 DI R+ E LR+ A + S +LI A I VN AF ITGY++ E VGK Sbjct: 379 DIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVNPAFARITGYSSTEAVGKS 438 Query: 228 PNLLRSDRHGPAFFQ----EMRES------VRRFGKWQGEIWDRRKNGEVYPEWLTISAV 277 L P F+ MRE +R + K E+W+ + Y I+ V Sbjct: 439 IRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELWN-----DFY-----IAPV 488 Query: 278 KNKDNQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTR 337 +++ +VTH+V+ +DI+ K E + A D LT L NR +L L+QAI ++ R + Sbjct: 489 RDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGVAERQK 548 Query: 338 TCGALLFIDLDHFKTLNDTVGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEG 397 ++F+DLD FK +NDT+GH+ GDTLL+ VA RL A VRE DTVAR+GGDEF+++L Sbjct: 549 QALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILP- 607 Query: 398 LNDTQQEAATQTRTIGEKILAALGQTYQLDEVEYRTTASIGATVFLGRAASVDELMKQAD 457 Q E TR++ ++I+ A+ L T S+G + + L+K AD Sbjct: 608 ---EQDELTLDTRSL-QRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIKHAD 663 Query: 458 LAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIEGNQLLLHYQPQV-VEGGRVT 516 +AMY+ K+TGRN +F+ PAM LER +E LR A++ + LLHYQP+V + GRV Sbjct: 664 IAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVI 723 Query: 517 GAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACTQLATWAKRPRMAELSI 576 G+E L+RWQHPQ GMV P FI LAEETGLIL +G WVL ACTQ W + A++S+ Sbjct: 724 GSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQW-QLGGYADISV 782 Query: 577 AVNVSAPQLREHDFVQTVLDIIDRTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGV 636 +VN+S Q + D V ++ D+++ TG P L+LELTESL++ +VE I + LK GV Sbjct: 783 SVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKLGV 842 Query: 637 EFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVI 696 S+DDFGTGYSSL+YLKR P++ LKID+SFVRD+ ID +DA+I +I++LA+ L L VI Sbjct: 843 RLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVI 902 Query: 697 AEGVETDAQRSFLADAGCHAYQGYYFCRPVTVEAFEK-FAQDR 738 AEGVETD Q +L GC QGY F PV + FE+ QDR Sbjct: 903 AEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQDR 945 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 368 bits (945), Expect = e-103, Method: Compositional matrix adjust. Identities = 229/587 (39%), Positives = 336/587 (57%), Gaps = 35/587 (5%) Query: 162 SFTGFRTSARDITDRK-----QIEAELRISAVAFDS-REGMLITDANSKILRVNKAFTEI 215 +F G R T+++ QIEA+L A + E ++ D I N+ ++ Sbjct: 95 AFLGRLMQGRADTEQRVRALDQIEAKLEQQAQILNQMHESVITMDPAGFITSWNRGAEQL 154 Query: 216 TGYTAEEIVGKHPNLLRSDRHGPAFFQEMRESVRRFGKWQGEIWDRRKNGEVYPEWLTIS 275 GY+A E +G++ L + ++ G + E+ R+K+GEV+ L++S Sbjct: 155 FGYSAMEAIGRNVLFLYENEDEEDSLHDL---FLEHGGREMEVRRRKKSGEVFWASLSLS 211 Query: 276 AVKNKDNQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLR 335 +++++ + +DI++RK AE+ I LA++DALT LPNRTLL + QA+ + Sbjct: 212 VMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALEEARH 271 Query: 336 TRTCGALLFIDLDHFKTLNDTVGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVL 395 G ++FIDL+ FK +NDT+GH GD LL +VA RL +RE D VAR+G DEF V L Sbjct: 272 ENLHGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAMRLRRALREQDVVARLGADEFAVAL 331 Query: 396 EGLNDTQQEAATQTRTIGEKILAALGQTYQLDEVEYRTTASIGATVFLGRAASVDELMKQ 455 G++ Q K+LA + +D E R ASIG +++ A + L++ Sbjct: 332 FGIDKDSPAYVAQ------KLLALFDDPFFIDGHELRVGASIGVSLYPENATDTETLLRL 385 Query: 456 ADLAMYKAKETGRN---ALRFFDPAMQTAVLERATLEAGLRKAIEGNQLLLHYQPQV-VE 511 AD+AMY+AK+ G N + M L+ +E GL A E N+LLL+YQP+V ++ Sbjct: 386 ADIAMYRAKQGGENNEGGYACYSEEMNRNTLDLLRIETGLLHAFEYNELLLYYQPKVDMQ 445 Query: 512 GGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACTQLATWAKRPRM 571 +TGAE LVRWQHP+RG++ PG+FIP+AEETGLI+ L +WVL+ C Q W K + Sbjct: 446 TLAITGAEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQARAW-KDAGL 504 Query: 572 AELSIAVNVSAPQLREHDFVQTVLDIIDRTGANPRR-------LKLELTESLLVDNVEDI 624 + IA+NV+A +F ++ + DR GA R L+LE+TES+L+ + + + Sbjct: 505 PPIRIALNVTA-----REFTRS---LPDRVGAALERHMLSGEWLELEITESMLMHSTDRV 556 Query: 625 IQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTI 684 I M + G+ SLDDFGTGYSSLSYLKR P+N LKID+SF + D ND +IA I Sbjct: 557 ISIMEKICGLGITVSLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAI 616 Query: 685 VNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYYFCRPVTVEAF 731 + +A+ L VIAEGVE + Q +FL +AGC+ QGY F RPV F Sbjct: 617 IGIAKQLRHKVIAEGVEDEKQFNFLREAGCNELQGYIFSRPVPAPDF 663 >gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum seropedicae SmR1] Length = 1002 Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/447 (42%), Positives = 271/447 (60%), Gaps = 10/447 (2%) Query: 296 DRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLRTRTCGALLFIDLDHFKTLND 355 +R+ A RI +LAF+D+LT LPNR+LLL + QAIA + R + A++FIDLD FK +ND Sbjct: 546 EREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCSTVAVMFIDLDRFKQVND 605 Query: 356 TVGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNDTQQEAATQTRTIGEK 415 ++GH+ GD LL+ VA RL + R +D V R+ GDEFVVVL TQ + T + ++ Sbjct: 606 SLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVL-----TQYDTQHLTEVV-KR 659 Query: 416 ILAALGQTYQLDEVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFD 475 I L ++ +ASIG +F ++ L+ +AD+AMY+AK R FF Sbjct: 660 IQERLAMPCHINGTPLNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFS 719 Query: 476 PAMQTAVLERATLEAGLRKAIEGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGMVPP 534 M + ER LE+ LR A+ G L L++QPQ+ + + G E L RW HPQ G + P Sbjct: 720 EEMNSMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISP 779 Query: 535 GDFIPLAEETGLILSLGNWVLETACTQLATWAKRPRMAELSIAVNVSAPQLREHDFVQTV 594 G FIP+AEE GLI LG W LE AC QL+ W +R SI+VN+SA + D Q V Sbjct: 780 GRFIPIAEECGLIGELGKWALEEACFQLSDWRRRGIQVP-SISVNLSATNFHDLDLPQFV 838 Query: 595 LDIIDRTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLK 654 ++ R P L LE+TE++L+D Q + A+ A G+ ++DDFGTGYSSL YL+ Sbjct: 839 TGLLRRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLR 898 Query: 655 RLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGC 714 +LP+++LK+DQSFVRD+ DP +++ ++ + +SL L V+AEGVE Q + L GC Sbjct: 899 KLPVSELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGC 958 Query: 715 HAYQGYYFCRPVTVEAFEKFAQDRDLH 741 QGY F RP++ +A E + RDLH Sbjct: 959 DVAQGYLFSRPMSADALENWV--RDLH 983 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,237,398 Number of extensions: 92455 Number of successful extensions: 423 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 47 Length of query: 745 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 653 Effective length of database: 1,184,250 Effective search space: 773315250 Effective search space used: 773315250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)