BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0122.p
         (310 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [...   394   e-111

>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score =  394 bits (1012), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/269 (78%), Positives = 233/269 (86%), Gaps = 8/269 (2%)

Query: 1   VNWIRQILLPVIILATGLGVTWTAWDHEREAAAKEVHTQFASVLRETVSRIEQRMASYEQ 60
           +NWIR ILLP++IL TGLGVTWTAW+HEREAA KE+HTQFASVLRETVSRIEQRMASYEQ
Sbjct: 1   MNWIRLILLPLVILVTGLGVTWTAWNHEREAANKELHTQFASVLRETVSRIEQRMASYEQ 60

Query: 61  MLHGVQGLISATGNIDRNQFRDYVDALNLDANFSGIQAIAIEEWVPAAQLEAHLARMARQ 120
           MLHGVQGL++ATG IDR+QFRDYV ALNLDANFSGIQAIA+EEWVPAA L AHLARM RQ
Sbjct: 61  MLHGVQGLVAATGAIDRSQFRDYVQALNLDANFSGIQAIAVEEWVPAAALPAHLARMERQ 120

Query: 121 GV-ADYKIRPIGSRTAYAPTILREPYVGRNRIAFGNDQWADPVRRAPPPRPRAMEKARDS 179
           G+   Y+IRP G R+AYAPT+LREPYVGRNR  FG DQW+DPVRR+      AMEKARDS
Sbjct: 121 GLEGGYQIRPAGERSAYAPTVLREPYVGRNRTPFGFDQWSDPVRRS------AMEKARDS 174

Query: 180 GMATVSGKIE-LSTEGPAAPAFMMYLPLYERGKPQSTIAERRASLIGWVHAVFRMSDVIA 238
           GMAT+SGK+E L+ +G   P FMMYLPLYERGKP +TIA+RRASL+GWVHA FRMSDVIA
Sbjct: 175 GMATISGKVEVLAADGQRYPTFMMYLPLYERGKPPTTIAQRRASLVGWVHATFRMSDVIA 234

Query: 239 SLYGENSRTIAFTLYDGVTQEAQALLYQS 267
           SLYGENS TI F+LYDGV    QALLYQS
Sbjct: 235 SLYGENSHTIVFSLYDGVQATPQALLYQS 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 952,588
Number of extensions: 37327
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,217,395
Effective search space: 273913875
Effective search space used: 273913875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)