BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0121.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311870|ref|YP_003775962.1| hypothetical protein Hsero_2555...   457   e-130

>gi|300311870|ref|YP_003775962.1| hypothetical protein Hsero_2555
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  457 bits (1175), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 214/242 (88%), Positives = 233/242 (96%)

Query: 18  GPDCSRPYTLALHDHGLLYSAATDTGIDKDFADELIRRSGCKVNVSLMSRARIWQLIESG 77
           GPDCSRPYTLALHDHGLLYS+ATDTGIDKDFADELIRRSGCKVNVSLMSRARIWQLIESG
Sbjct: 44  GPDCSRPYTLALHDHGLLYSSATDTGIDKDFADELIRRSGCKVNVSLMSRARIWQLIESG 103

Query: 78  ALDFSLSGITNPERDKFAAFAWYFSNKYYLLVRKDAGITQLADVARNDRFQLGVIRGFRY 137
           ALDFSLSGITN +RD+FA+FAWYFSNKYYLLVRKDAG+ QLADV RN+RF LGVIRGFRY
Sbjct: 104 ALDFSLSGITNAQRDQFASFAWYFSNKYYLLVRKDAGVMQLADVTRNERFHLGVIRGFRY 163

Query: 138 SSNANRMVDQLTAANRVTLAGGLEPLYEALLQNRIQGMIMEPFDYPVVEEKRIREATTII 197
           S+NANRMVDQLTA+NRV+ AGGLEPLY+ALL +RIQGMIMEPFDYPVV+EKRIR+ATTII
Sbjct: 164 SANANRMVDQLTASNRVSQAGGLEPLYDALLLDRIQGMIMEPFDYPVVQEKRIRDATTII 223

Query: 198 SFEDPSVPHGLIMSRKALAPAELDKWRALVNGMLADGTVLRIFRKYFNPELAAAMVEFQS 257
           SF+DPSVPHGLIMSRKAL+PAE DKWRALV+GM ADGTVLRIF+KYFN ELAA+MV+FQS
Sbjct: 224 SFDDPSVPHGLIMSRKALSPAEQDKWRALVDGMRADGTVLRIFQKYFNAELAASMVQFQS 283

Query: 258 KP 259
           KP
Sbjct: 284 KP 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,272
Number of extensions: 30563
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)