BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0118.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 412 e-116 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 185 4e-48 gi|300313746|ref|YP_003777838.1| LysR family transcription regul... 175 3e-45 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 137 1e-33 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 135 4e-33 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/225 (89%), Positives = 216/225 (96%) Query: 1 MNQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTA 60 M+QLDTL+IFQRVAELASFSGAARQLGLPNASVSLA+QQLEQMLGTRLLQRTTRRVQLTA Sbjct: 1 MHQLDTLRIFQRVAELASFSGAARQLGLPNASVSLAIQQLEQMLGTRLLQRTTRRVQLTA 60 Query: 61 DGEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQ 120 DGEAFYRRS++LLDEFESLRGMF G Q LSG+LRVDMSSAMAREVVLPALP+FL +HPQ Sbjct: 61 DGEAFYRRSRELLDEFESLRGMFHDGAQALSGRLRVDMSSAMAREVVLPALPSFLDKHPQ 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRT 180 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCAS YL+R+GTP+T Sbjct: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASPEYLRRYGTPQT 180 Query: 181 LEDLAHHQLVHYRQVLGGRSPGWEWFDGTQTRTLPMAGSVTVNST 225 LEDLA H+LVHYRQVLGGRSPGWEWFDG QTR+LPMAGS+TVNST Sbjct: 181 LEDLAQHRLVHYRQVLGGRSPGWEWFDGQQTRSLPMAGSITVNST 225 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 185 bits (469), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 133/224 (59%) Query: 1 MNQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTA 60 M++ +++F V + SF+ AA L LP +V+ VQ LE ML RLL RTTRR+ LT Sbjct: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 Query: 61 DGEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQ 120 DG A+Y R +L + + FR + G+LR+D+ +++ R ++LP L F ++P Sbjct: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRT 180 +E+ + DR VDLV E DCV+R G L DSS+VAR IG + CA+ AYL+RHG P T Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 Query: 181 LEDLAHHQLVHYRQVLGGRSPGWEWFDGTQTRTLPMAGSVTVNS 224 +EDL H+ VHY GR+ W++ TR + M G + VN Sbjct: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNE 224 >gi|300313746|ref|YP_003777838.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 175 bits (444), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 133/202 (65%), Gaps = 3/202 (1%) Query: 1 MNQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTA 60 M+QL ++ F RV E +F+ AA L +PNA++S V++LE LG RLLQRTTRRV +T Sbjct: 1 MDQLLAIRAFARVVEAGNFTRAADSLDMPNATLSKLVRELEAHLGVRLLQRTTRRVSVTP 60 Query: 61 DGEAFYRRSQDLLDEFESLRGMFRAG-GQPLSGKLRVDMSSAMAREVVLPALPTFLAQHP 119 +G +Y ++ L+ + E + F A G P GKLR+D+ + AR+V++PALP FLA++P Sbjct: 61 EGLDYYEKTGRLVRDLEDIDTSFNAARGNP-RGKLRIDVGGSTARDVLIPALPDFLARYP 119 Query: 120 QLEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPR 179 + I+L SDR VDL+ + DCV+R G LD+SSLVAR IG + CA+ AYLK+ G P Sbjct: 120 DISIDLGVSDRPVDLIGDSVDCVIRGGPLDNSSLVARQIGQARMVTCATPAYLKQFGVPA 179 Query: 180 TLEDLAH-HQLVHYRQVLGGRS 200 ++L + H+L+ Y GR+ Sbjct: 180 YPDELKNGHRLISYLSPQSGRA 201 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/192 (38%), Positives = 109/192 (56%) Query: 1 MNQLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTA 60 MN+L ++ F VA+L SF AA LG+ A+VS V +LE LG+RL+QRTTRR+ LT Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 DGEAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQ 120 G + R + ++ E + +G +G LR++ + P P FL +HP+ Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 LEIELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRT 180 + ++++ SDR VD++ EG+D +R L DS+LV R + CAS AYL HGTP Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAH 180 Query: 181 LEDLAHHQLVHY 192 +LA HQ + Y Sbjct: 181 PHELAQHQTISY 192 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 135 bits (340), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 116/206 (56%) Query: 3 QLDTLKIFQRVAELASFSGAARQLGLPNASVSLAVQQLEQMLGTRLLQRTTRRVQLTADG 62 QL ++++F + AEL SF+ AA LGL ASVS ++ +LE LG RL RTTR+++LT +G Sbjct: 8 QLGSIELFCKAAELGSFTAAAEALGLTPASVSRSISRLESRLGVRLFARTTRQIRLTREG 67 Query: 63 EAFYRRSQDLLDEFESLRGMFRAGGQPLSGKLRVDMSSAMAREVVLPALPTFLAQHPQLE 122 E + + Q L++ + + SG LR+ + + A +LP LP F +PQ+E Sbjct: 68 ELYRDQCQQALEQIADAERILTGQQKVPSGLLRISVGTPYAHYRLLPLLPRFQQAYPQIE 127 Query: 123 IELSASDRRVDLVAEGFDCVLRTGTLDDSSLVARPIGHLVQINCASAAYLKRHGTPRTLE 182 +ELS ++R VD V EG+D +R G DS L+A + A+ AYL R G PR++ Sbjct: 128 VELSIANRVVDFVEEGYDLAIRLGVPPDSRLIAHTLEEATLGLFAAPAYLARRGQPRSIA 187 Query: 183 DLAHHQLVHYRQVLGGRSPGWEWFDG 208 +L H + + GR+ W + D Sbjct: 188 ELEQHDCIQFILPSSGRAMPWIFKDA 213 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.133 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 825,969 Number of extensions: 31482 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 56 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)