BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0114.p (1207 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 2173 0.0 gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 1346 0.0 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 2173 bits (5630), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1056/1165 (90%), Positives = 1109/1165 (95%), Gaps = 7/1165 (0%) Query: 39 SDTSGLAPVSLDDKYTATEGAIYLSGIQALVRLPMLQQIRDRAAGLNTAGFISGYRGSPL 98 +D LAPVSLDDKYTAT GAIYLSGIQALVRLP+LQQIRDRAAGLNTAGFISGYRGSPL Sbjct: 9 TDDVPLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPL 68 Query: 99 GGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVRLIGPSDYDGVYAMWYGKGP 158 GGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQV+LIGPSDYDGVYAMWYGKGP Sbjct: 69 GGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGP 128 Query: 159 GVDRCGDVLKHMNHAGTSAQGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQ 218 GVDRCGDVLKHMNHAGTSA GGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQ Sbjct: 129 GVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQ 188 Query: 219 EYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVDIRLPTDFVMPAGGLNAR 278 EYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRV IRLP+DFVMP GGLNAR Sbjct: 189 EYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNAR 248 Query: 279 LSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPRARLGIIASGKSYLDVLE 338 LSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSP+ARLGIIASGKSYLDVLE Sbjct: 249 LSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLE 308 Query: 339 ALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQ 398 ALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQ Sbjct: 309 ALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQ 368 Query: 399 LYNWRDDVRPRVIGKFDEKGEW-------LLTSKADFSVAQIARVIAARIARFHTSDLIK 451 LYNWRDDVRPRVIGKFDEKGEW LLTSKADFSVAQIARVIAARIARFHTSDLIK Sbjct: 369 LYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIARFHTSDLIK 428 Query: 452 ARLAFLDAKDAVLTKAVNTPPRPAYYCSGCPHNTSTRVPEGSFALAGIGCHVMATAIYPE 511 ARLAFLDAKDAVL+KAVNTPPRPAYYCSGCPHN+STRVPEGSFALAGIGCHVMATAIYPE Sbjct: 429 ARLAFLDAKDAVLSKAVNTPPRPAYYCSGCPHNSSTRVPEGSFALAGIGCHVMATAIYPE 488 Query: 512 FNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAARVNMTYKILY 571 FNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAA+VNMTYKILY Sbjct: 489 FNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNMTYKILY 548 Query: 572 NDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDISRYIDRNGLPAAVSLHDRKE 631 NDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSED RY DR+ LPAAV++HDRK+ Sbjct: 549 NDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAVTVHDRKD 608 Query: 632 MDAVQRELREIPGVSVIIYDQTCAAEKRRRRKKGEFPDPNERLFINAAVCEGCGDCGVQS 691 MDAVQRELRE+PGV+VIIYDQTCAAEKRRRRKKG++PDPN+RLFINAAVCEGCGDCGVQS Sbjct: 609 MDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEGCGDCGVQS 668 Query: 692 NCTSILPLETELGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGQLKKSRTGVHKKGAADD 751 NCTSILPLET+LGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGG+L+KSRTGV ++ DD Sbjct: 669 NCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKSRTGVSRQEERDD 728 Query: 752 FGALPEPAIPSCETPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGS 811 FG LP+P +P+C+TPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGS Sbjct: 729 FGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGS 788 Query: 812 VTSHVRIAARRDTIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPP 871 VTSHVRIAARRD IRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPP Sbjct: 789 VTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPP 848 Query: 872 GQFAKNPDWQFPFEEVKALILESVDQQADFIDATRLATALMGDAIATNLFMLGYAWQRGE 931 GQFA+NPDW+FP EEVKALI+ESV QQADFIDATRLATALMGD+IATNLFMLGYAWQRGE Sbjct: 849 GQFARNPDWEFPVEEVKALIVESVGQQADFIDATRLATALMGDSIATNLFMLGYAWQRGE 908 Query: 932 LPLSEAALLRAIELNGVAVEANQTAFRWGRRAAVDLRRVEQIAVPAQPVVVHLPQSLDQL 991 LPL+EA+LLRAIELNGVAV+AN+TAF WGRRAAVDL RVEQIAVPAQPV++HLPQSLDQL Sbjct: 909 LPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIAVPAQPVLLHLPQSLDQL 968 Query: 992 IKRRVALLTEYQDASYAAQFAEVVAAVRAAEAPLGSDKLTLAVARSLSRLMTYKDEYEVA 1051 IKRRV+LLT+YQDA+YAAQF EVV AVRAAEA LGSDKL AVAR+LSRLM YKDEYEVA Sbjct: 969 IKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSDKLATAVARNLSRLMAYKDEYEVA 1028 Query: 1052 RLYTNGQFQKDLAQQFEGEFTLSFNLAPPIFARKDGQGRLAKARYGSWMMTAFKLLARCK 1111 RLYTNGQFQK+LAQQFEG+F+LSF+LAPP+ ARKDGQG L KARYG W+M AFKLLAR K Sbjct: 1029 RLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKARYGGWVMQAFKLLARMK 1088 Query: 1112 GLRGGVFDFFGRTAERRMERALIVQYRQMVLALLPALTADNLAEAIALAQLPEQVRGFGH 1171 GLRGG+ D FG T ERRMER LIVQYRQ+VL LLP LTA NLA AI LAQLPEQVRG+GH Sbjct: 1089 GLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIELAQLPEQVRGYGH 1148 Query: 1172 VKEQAVQAMQRRQAELLAAFAQAGK 1196 VK +AV AM+ RQ +LLA FAQAG+ Sbjct: 1149 VKLKAVHAMRTRQQQLLAVFAQAGQ 1173 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 1346 bits (3484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 676/1180 (57%), Positives = 842/1180 (71%), Gaps = 35/1180 (2%) Query: 52 KYTATEGAIYLSGIQALVRLPMLQQIRDRAAGLNTAGFISGYRGSPLGGLDEALWHAQPH 111 KYT G ++++GIQALVRLPMLQ+ D+ AGLNTAGFI+GYRGSPLG +D+ A+ + Sbjct: 21 KYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFITGYRGSPLGAVDQTAEKARKY 80 Query: 112 LAAHRVKFQPGVNEDMAATAVWGTQQVRLIGPSDYDGVYAMWYGKGPGVDRCGDVLKHMN 171 L A ++KF PG+NED+AAT+VWGTQQV L + YDGV+++WYGKGPGVDRCGDV KH N Sbjct: 81 LEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRCGDVFKHAN 140 Query: 172 HAGTSAQGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDLGLHGWAMS 231 AGTS GGVL++AGDDH A SST HQS+HI A IP+LYP +VQEYLD GLHGWAMS Sbjct: 141 MAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDYGLHGWAMS 200 Query: 232 RYSGCVVGFKALADTVESSASVDADPFRVDIRLPTDFVMPAGGLNARLSTDTLGVQARKQ 291 RY+G V K + D VES SV DP RV I+LP DF +P GLN R LG Q Sbjct: 201 RYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELPPDGLNIRQPDTVLG-----Q 255 Query: 292 EALMQDYKIYAALAYARANRLNRVMIDSPRARLGIIASGKSYLDVLEALSELGIDEAFAA 351 EA M +YK YAALAYARAN+LNR++ DSPRAR+GII +GKSYLD +AL +LGIDE A Sbjct: 256 EARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDLGIDEQAAR 315 Query: 352 EIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVI 411 +IG+RL+KV M WPLE +GVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWRDDVRPRV+ Sbjct: 316 DIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVV 375 Query: 412 GKFDEKGEW-----------LLTSKADFSVAQIARVIAARIARFH----TSDLIKARLAF 456 GKFD+ GEW LL + + + AQIAR IA RI+R+ ++AR+A+ Sbjct: 376 GKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAY 435 Query: 457 LDAKDAVLTKAVNTPP---RPAYYCSGCPHNTSTRVPEGSFALAGIGCHVMATAIYPEFN 513 L+AK+A L + P R ++CSGCPHNTST++PEGS LAGIGCH M T + E Sbjct: 436 LEAKEATLNISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRE-T 494 Query: 514 KLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAARVNMTYKILYND 573 KL THMGGEG W+GQAPF+ HVFANLGDGTYFHSG LA+RA+VAA+VN+TYKILYND Sbjct: 495 KLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVNITYKILYND 554 Query: 574 AVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDISRYIDRNGLPAAVSLHDRKEMD 633 AVAMTGGQ DG + MI++Q+AAE V+ I +V+++ +Y V++ R E+D Sbjct: 555 AVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGVTIRHRSELD 614 Query: 634 AVQRELREIPGVSVIIYDQTCAAEKRRRRKKGEFPDPNERLFINAAVCEGCGDCGVQSNC 693 AVQRELRE PGVS +IYDQTCA+EKRRRRK+ +PDP +R IN AVCEGCGDC VQSNC Sbjct: 615 AVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGCGDCSVQSNC 674 Query: 694 TSILPLETELGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGQLKKSRTGVHKKGAADDFG 753 S+ PLETE GRKR I+QSSCNKDYSCV GFCPSFVTV GGQLKK G A Sbjct: 675 LSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARAQADVGPA--LP 732 Query: 754 ALPEPAIPSCETPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGSVT 813 +LPEP +P P+ IL+ G+GGTGVITIG ++ MAAH+EG+ SVLDM+G++QK G V Sbjct: 733 SLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVM 792 Query: 814 SHVRIAARRDTIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPPGQ 873 SHVR+A I + R+ TG ADLV+GCD++ + DA+S+M GRT A VN Q P Sbjct: 793 SHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTHAAVNSTQMPTAA 852 Query: 874 FAKNPDWQFPFEEVKALILESVDQ-QADFIDATRLATALMGDAIATNLFMLGYAWQRGEL 932 F +NPDWQFP + I + + +DA R+ATALMGDAIATN+FMLGYAWQ+G + Sbjct: 853 FVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNMFMLGYAWQKGWV 912 Query: 933 PLSEAALLRAIELNGVAVEANQTAFRWGRRAAVDLRRVEQIA----VPAQPVVVHLPQSL 988 PLSEAALLRAIELN + VE N+ AF WGR AA D+ V A + AQ + +L Sbjct: 913 PLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMSAQVIEFKRTPTL 972 Query: 989 DQLIKRRVALLTEYQDASYAAQFAEVVAAVRAAEAPLGSD----KLTLAVARSLSRLMTY 1044 D+L++RRVA LT+Y +A+YA + + V VRA E+ LG KL+ AVA L +LM Y Sbjct: 973 DELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSRAVASYLFKLMAY 1032 Query: 1045 KDEYEVARLYTNGQFQKDLAQQFEGEFTLSFNLAPPIFARKDGQGRLAKARYGSWMMTAF 1104 KDEYEVARL+ + F+ +A FEG++ L F+LAPP+ A++D +G L K +GSWMM F Sbjct: 1033 KDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLRKQAFGSWMMPVF 1092 Query: 1105 KLLARCKGLRGGVFDFFGRTAERRMERALIVQYRQMVLALLPALTADNLAEAIALAQLPE 1164 +LAR + LRG D F T ERR ERALI +YR + LL LT +NL + A+A++PE Sbjct: 1093 GVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPENLEQITAVARIPE 1152 Query: 1165 QVRGFGHVKEQAVQAMQRRQAELLAAFAQAGKKPAPSATP 1204 ++RG+GHVKE+ ++A +QA LLA QA + P + P Sbjct: 1153 EIRGYGHVKERHLKAAMEKQAALLAQLGQAAAQTQPQSPP 1192 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,632,412 Number of extensions: 152459 Number of successful extensions: 505 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 496 Number of HSP's successfully gapped: 2 Length of query: 1207 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1111 Effective length of database: 1,165,310 Effective search space: 1294659410 Effective search space used: 1294659410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)