BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0113.p (203 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311865|ref|YP_003775957.1| acyl-CoA dehydrogenase [Herbasp... 377 e-106 gi|300310260|ref|YP_003774352.1| acyl-CoA dehydrogenase [Herbasp... 178 2e-46 gi|300313969|ref|YP_003778061.1| isovaleryl-CoA dehydrogenase [H... 109 2e-25 gi|300312109|ref|YP_003776201.1| acyl-CoA dehydrogenase [Herbasp... 106 1e-24 gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbasp... 87 9e-19 >gi|300311865|ref|YP_003775957.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 386 Score = 377 bits (969), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/203 (93%), Positives = 196/203 (96%) Query: 1 VPGDTPGISYGKKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRIN 60 VPG+ PG+SYGKKESKMGWNSQPTRTISFDNVKVP +LLG+EG+GF+FAMKGLDGGRIN Sbjct: 184 VPGNAPGVSYGKKESKMGWNSQPTRTISFDNVKVPADHLLGQEGQGFIFAMKGLDGGRIN 243 Query: 61 IATCSVGAAQAALDAAHAYMKERKQFGRPIADFQALQFKLADMQTELVAARQMVRLAAAK 120 IATCSVGAAQAALDAAHAYMKERKQFGRPIADFQALQFKLADMQTELVAARQMVRLAA K Sbjct: 244 IATCSVGAAQAALDAAHAYMKERKQFGRPIADFQALQFKLADMQTELVAARQMVRLAATK 303 Query: 121 LDAGSPEATTYCAMAKRLATDLGFRVCNEALQLHGGYGYIREYPLERYFRDVRVHQILEG 180 LDAGSPEATTYCAMAKRLATDLGFRVCNEALQLHGGYGYIREYPLERYFRDVRVHQILEG Sbjct: 304 LDAGSPEATTYCAMAKRLATDLGFRVCNEALQLHGGYGYIREYPLERYFRDVRVHQILEG 363 Query: 181 TNEIMRVIISRNLLGRDTLDDIR 203 TNEIMRVIISR LL RD LDDIR Sbjct: 364 TNEIMRVIISRKLLDRDNLDDIR 386 >gi|300310260|ref|YP_003774352.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 382 Score = 178 bits (452), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 126/193 (65%), Gaps = 1/193 (0%) Query: 1 VPGDTPGISYGKKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRIN 60 VP DTPG G+ E KMG ++ T I DN +VP LLG+EGEG+ A+ L+ GRI Sbjct: 184 VPCDTPGFVVGRSEEKMGQHASDTVQIMLDNCRVPATALLGKEGEGYRIALSNLEAGRIG 243 Query: 61 IATCSVGAAQAALDAAHAYMKERKQFGRPIADFQALQFKLADMQTELVAARQMVRLAAAK 120 IA SVG A+AA +AA +Y ++R+ FG PI + QA+ F+LADM T L AAR MV AA Sbjct: 244 IAAQSVGMARAAFEAAVSYARQRESFGVPIIEHQAVNFRLADMNTLLDAARLMVWRAAQL 303 Query: 121 LDAGSPEATTYCAMAKRLATDLGFRVCNEALQLHGGYGYIREYPLERYFRDVRVHQILEG 180 D G P +MAK A++ ++ ++A+Q+HGG GY ++P+ER +RDVR+ QI EG Sbjct: 304 KDQGRP-CLKEASMAKMFASEAAEKIASDAIQIHGGVGYTSDFPVERIYRDVRICQIYEG 362 Query: 181 TNEIMRVIISRNL 193 N+I R++I R + Sbjct: 363 ANDIQRLVIGRAI 375 >gi|300313969|ref|YP_003778061.1| isovaleryl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 394 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 7 GISYGKKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSV 66 G S +K K+G T + F + +VP N+LG G G M GLD R ++ + Sbjct: 198 GFSVAQKLDKLGMRGSHTGELVFQDCEVPEENVLGGVGRGVNVLMSGLDFERSVLSGGPL 257 Query: 67 GAAQAALDAAHAYMKERKQFGRPIADFQALQFKLADMQTELVAARQMVRLAAAKLDAGSP 126 G QA +D Y+ +RKQFG+ I +FQ +Q KLADM + ++A + V D + Sbjct: 258 GIMQACMDVVVPYVHDRKQFGQAIGEFQLMQGKLADMYSTMMACKAYVYAVGQACDR-AD 316 Query: 127 EATTYCAMAKRLATDLGFR------VCNEALQLHGGYGYIREYPLERYFRDVRVHQILEG 180 A A+ K A + + + EA+Q GG GYI EYP+ R +RD ++++I G Sbjct: 317 SADKVRALRKDAAGAILYSAEKATWMAGEAIQSLGGNGYINEYPVGRLWRDAKLYEIGAG 376 Query: 181 TNEIMRVIISRNLLGRDTL 199 T+EI R++I R L DTL Sbjct: 377 TSEIRRMLIGRELFA-DTL 394 >gi|300312109|ref|YP_003776201.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 388 Score = 106 bits (264), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 1/175 (0%) Query: 21 SQPTRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSVGAAQAALDAAHAYM 80 + T + FDN+++P NL+GEEG GF + + GL+ R IA +G +D A Y Sbjct: 210 NHETNELFFDNLEIPAENLIGEEGRGFRYILDGLNAERTLIAAECIGDGYWFIDKATQYA 269 Query: 81 KERKQFGRPIADFQALQFKLADMQTELVAARQMVRLAAAKLDAGSPEATTYCAMAKRLAT 140 +ER F RPI Q +QF LA+ E+ AA M A A DA MAK LA Sbjct: 270 RERVVFDRPIGMNQGVQFPLAEAYIEVEAANLMRYQACALFDA-QQSCGAQANMAKYLAA 328 Query: 141 DLGFRVCNEALQLHGGYGYIREYPLERYFRDVRVHQILEGTNEIMRVIISRNLLG 195 + N LQ HGG+G+ EY +ER FR+ R++Q+ + ++ ++ ++LG Sbjct: 329 KAAWEAANVCLQTHGGFGFACEYDVERKFRETRLYQVAPISTNLIFSYVAEHVLG 383 >gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 591 Score = 87.0 bits (214), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 25/222 (11%) Query: 3 GDTPGISYGKKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIA 62 G G+ E KMG + T ++ F+ + L+GE G G ++ R+++ Sbjct: 240 GSRNGVHCTGIEHKMGIHGSATCSLHFEQAQA---WLVGEAGRGLAAMFVMMNAARLHVG 296 Query: 63 TCSVGAAQAALDAAHAYMKERKQFGRP-------IADFQALQFKLADMQTELVAARQMVR 115 +G A+AA A AY +ER+Q P I A+Q L + + + AR + Sbjct: 297 AQGLGLAEAAYQRASAYARERRQSRAPGSSGNDLIVHHPAVQKLLMEQRCRIEGARLLTC 356 Query: 116 LAAAKLDAGS--PEATTYCAMAKRLA----------TDLGFRVCNEALQLHGGYGYIREY 163 A LD PEA +RL TD GF+ + ALQ+ GG+GY+ E Sbjct: 357 WAGLLLDLAEHDPEAALRSRHHERLEFITPVIKAFLTDQGFQCASRALQVFGGHGYVVET 416 Query: 164 PLERYFRDVRVHQILEGTNEIMRV-IISRNLLGRD--TLDDI 202 +E++ RD R+ I EGTNEI + + R +LG + LDD Sbjct: 417 GIEQFMRDARITMIYEGTNEIQAIDFLMRKVLGDEGRRLDDF 458 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 600,482 Number of extensions: 22735 Number of successful extensions: 83 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 10 Length of query: 203 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 122 Effective length of database: 1,236,335 Effective search space: 150832870 Effective search space used: 150832870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)