BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0108.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311861|ref|YP_003775953.1| succinylglutamate desuccinylase...   560   e-161

>gi|300311861|ref|YP_003775953.1| succinylglutamate desuccinylase
           [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score =  560 bits (1444), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/320 (83%), Positives = 292/320 (91%)

Query: 3   SDSLPSSLRRLQYAAFTPGPRLLILGAVHGNETCGTHAIARLQRELDSGQLRLQRGLLTL 62
           S  LPSSL+R QYAAF PGPRLL+LGAVHGNETCGT AI RL++ELDSGQL L RGLLTL
Sbjct: 2   STLLPSSLQRFQYAAFQPGPRLLVLGAVHGNETCGTQAITRLRQELDSGQLHLVRGLLTL 61

Query: 63  VPVTNPLAYEKQQRQGDRNLNRNLRPHPAPANFEDQLCNVICPWINEHEILLDLHSFHTG 122
           VPVTNPLAY + QRQG+RNLNRNLRPHP PANFED+LCNV+CPWI+EHE+LLDLHSFHTG
Sbjct: 62  VPVTNPLAYARHQRQGERNLNRNLRPHPDPANFEDRLCNVLCPWIDEHEVLLDLHSFHTG 121

Query: 123 GMPFAMLGPEDNAGDVEPFAHAAAEARMVAHLGCQRVVEGWMGAYVRGVERRRQQGHAVS 182
           G+PFAMLGP+DN G+VEPFA AAAE RMVAHLGCQRVVEGWM AYVRGV+RRRQQG AVS
Sbjct: 122 GVPFAMLGPQDNTGEVEPFALAAAEQRMVAHLGCQRVVEGWMSAYVRGVQRRRQQGRAVS 181

Query: 183 PDLLDRQYGVGTTEYARSKGLYGVTLECGQHDDPQAPEVAYRAILQTLALHGMIDAPLQP 242
           PDLLD QYGVGTTEYAR +GLYGVTLECGQHDDPQAPEVAY+AI QTLALHGMI+APL P
Sbjct: 182 PDLLDTQYGVGTTEYARGRGLYGVTLECGQHDDPQAPEVAYQAIRQTLALHGMIEAPLAP 241

Query: 243 PMAEIQLIRLVDVIDMEHAEDRFTREWSSFDRVQQGQVIGHRHDGQAVLAPGDGYIVFPN 302
           P   I++IRLVDVIDM+H EDRF REW+SFDRV+ G++IGHRHDG AV APGDGYIVFPN
Sbjct: 242 PADGIEIIRLVDVIDMDHPEDRFLREWASFDRVRAGELIGHRHDGAAVTAPGDGYIVFPN 301

Query: 303 PRALPGNEWFYFGVDSQRRL 322
           PRALPGNEWFYFGVDS+RRL
Sbjct: 302 PRALPGNEWFYFGVDSERRL 321


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,118,952
Number of extensions: 46888
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)