BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0106.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311860|ref|YP_003775952.1| hypothetical protein Hsero_2545...   236   8e-64

>gi|300311860|ref|YP_003775952.1| hypothetical protein Hsero_2545
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  236 bits (602), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 131/158 (82%)

Query: 8   NSLPDVARDEPASIALPLQWVGMCGIALPLRLADGTQLPASAEVAVDLPDPQAKGIHMSR 67
            +LPDVAR+E ASIALPL WVGMCGIALP+RL +G  +PASAE+AVDLP  QAKGIHMSR
Sbjct: 3   TALPDVAREERASIALPLDWVGMCGIALPVRLDNGQIVPASAEIAVDLPHAQAKGIHMSR 62

Query: 68  LYLLLDAFASRSRLTPTAAHELLRQMRESHADCQSRAALLRLDFALLQQRAALVTPELAG 127
           LYLLLD FA+++ L P A H LL QMR SHADC SRAA LRLDFALL QRAALVTP LAG
Sbjct: 63  LYLLLDRFAAQATLNPAALHALLDQMRASHADCGSRAASLRLDFALLHQRAALVTPALAG 122

Query: 128 WKSYPVTLTAQLRDSTLEIRLQVRIAYSSTCPCSAALS 165
           WKSYP TL A+L+   L + LQVRIAYSSTCPCSAALS
Sbjct: 123 WKSYPFTLAAELQQDRLHLTLQVRIAYSSTCPCSAALS 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 529,383
Number of extensions: 18732
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)