BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0105.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311859|ref|YP_003775951.1| CobW/P47K family protein [Herba...   205   9e-55
gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protei...    84   4e-18

>gi|300311859|ref|YP_003775951.1| CobW/P47K family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 404

 Score =  205 bits (521), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 94/112 (83%), Positives = 103/112 (91%)

Query: 1   VVRSKGFFWLATRPAHAGSWSQAGAVCRHGLAGKWWAAVPREKWPQDQESIDFILEQWDD 60
           VVRSKGFFWLA+RP  AGSWSQAGAVCRHGLAGKWWAAVPRE+WPQDQES+DFIL  WD+
Sbjct: 292 VVRSKGFFWLASRPTQAGSWSQAGAVCRHGLAGKWWAAVPREQWPQDQESVDFILAHWDE 351

Query: 61  NVGDARQELVLIGMEMNQAALTAKLEACLLTDAEMAQGPMGWARMADPFPGW 112
           NVGDARQELVLIGM M+Q AL A+L+ACLL+DAEMAQGP+GWARM DPFP W
Sbjct: 352 NVGDARQELVLIGMAMDQEALRARLDACLLSDAEMAQGPLGWARMRDPFPLW 403


>gi|300310263|ref|YP_003774355.1| cobalamin synthesis P47K protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score = 83.6 bits (205), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 60/105 (57%)

Query: 1   VVRSKGFFWLATRPAHAGSWSQAGAVCRHGLAGKWWAAVPREKWPQDQESIDFILEQWDD 60
           ++R KG+ W+++R +      Q G   + G  G+WW  +   +WPQD      I E+WD 
Sbjct: 294 LLRCKGYLWISSRYSDIALLVQTGGQFQWGFVGRWWRFIEPAQWPQDTYRRQGIQEKWDA 353

Query: 61  NVGDARQELVLIGMEMNQAALTAKLEACLLTDAEMAQGPMGWARM 105
             GD RQELV IG  ++   LT +L+ACLLT  E+  GP  WA++
Sbjct: 354 LAGDCRQELVFIGQGIDGDLLTEELDACLLTTTEIEAGPDAWAQL 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 412,795
Number of extensions: 15638
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)