BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0102.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic pro...   336   1e-93
gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic pro...   252   1e-68

>gi|300313454|ref|YP_003777546.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 329

 Score =  336 bits (861), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 162/169 (95%), Positives = 168/169 (99%)

Query: 1   VVAITSFVEHPALDAVRDGTKDELIAEGFEPGKNLKWDFQSAQANAGTAGQIAKKFVGDN 60
           VVA+TS+VEHPALDAVRDGTKDEL+A GFEPGKNLKW+FQSAQANAGTAGQIAKKFVGDN
Sbjct: 36  VVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLKWEFQSAQANAGTAGQIAKKFVGDN 95

Query: 61  PDVIVAIGTPSAQPMVAATKSIPIVYSAIADPMAAQLVKDWKPSGTNVTGLSHMLDPVKQ 120
           PDVIVAIGTPSAQPMVAATK+IPIVYSAIADPMAAQLVKDWKPSGTNVTG+SHMLDPVKQ
Sbjct: 96  PDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLVKDWKPSGTNVTGMSHMLDPVKQ 155

Query: 121 VEVIKRVVPEAKRVGVVYNPGEANSVSALNNLKGELQKAGLTLVEAAAP 169
           VEVIKRVVPEAKRVGVVYNPGEANSVSALNNLKGELQKAGLTLVEAAAP
Sbjct: 156 VEVIKRVVPEAKRVGVVYNPGEANSVSALNNLKGELQKAGLTLVEAAAP 204


>gi|300313455|ref|YP_003777547.1| ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  252 bits (644), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 140/168 (83%)

Query: 2   VAITSFVEHPALDAVRDGTKDELIAEGFEPGKNLKWDFQSAQANAGTAGQIAKKFVGDNP 61
           VA+T+ VEHPALDAVRDG KDEL  EGFE GKNLKW++QSAQ N GTA QIA+KFVGD P
Sbjct: 33  VAVTAIVEHPALDAVRDGVKDELKEEGFEAGKNLKWEYQSAQGNTGTAAQIARKFVGDKP 92

Query: 62  DVIVAIGTPSAQPMVAATKSIPIVYSAIADPMAAQLVKDWKPSGTNVTGLSHMLDPVKQV 121
           D IVAI TPSAQ +VAATKSIP+VYS + DP+AAQLVKDWK SGTNVTG+S +L+  KQV
Sbjct: 93  DAIVAIATPSAQALVAATKSIPVVYSGVTDPVAAQLVKDWKASGTNVTGVSDLLELDKQV 152

Query: 122 EVIKRVVPEAKRVGVVYNPGEANSVSALNNLKGELQKAGLTLVEAAAP 169
           ++IKRVVP AKRVG+VYNPGEANS   +  LK  L K+ +TLVEAAAP
Sbjct: 153 DLIKRVVPNAKRVGMVYNPGEANSAVVVKALKELLAKSNMTLVEAAAP 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 682,010
Number of extensions: 25142
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)