BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0100.p (293 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbasp... 526 e-151 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 97 1e-21 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 96 4e-21 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 94 2e-20 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 94 2e-20 >gi|300313452|ref|YP_003777544.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 526 bits (1356), Expect = e-151, Method: Compositional matrix adjust. Identities = 261/264 (98%), Positives = 263/264 (99%) Query: 1 MLKATDLKITFNPGTPIENPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 MLKATDLKITFNPGTPIENPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT Sbjct: 1 MLKATDLKITFNPGTPIENPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 Query: 61 GKIEIDGTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIR 120 GKIEID TDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIR Sbjct: 61 GKIEIDSTDVTRKQAWDRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIR 120 Query: 121 GKMRELFREKLAILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD 180 GKMRELFREKL+ILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD Sbjct: 121 GKMRELFREKLSILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALD 180 Query: 181 PKTAAFVLELTAKIVSEAKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD 240 PKTAAFVLELTAKIVSE+KLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD Sbjct: 181 PKTAAFVLELTAKIVSESKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLDVSGPERAGLD 240 Query: 241 VPDLLKMFEQTRGEKLSDDALLLG 264 VPDLLKMFEQTRGEKLSDDALLLG Sbjct: 241 VPDLLKMFEQTRGEKLSDDALLLG 264 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 22/232 (9%) Query: 1 MLKATDLKITFNPGTPIENPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDT 60 ++K DL +F N L G+SL++ GQ VA+IG +G+GKST L ++G VD Sbjct: 4 IVKIKDLHKSFG-----SNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDA 58 Query: 61 GKIEIDGTDVTRKQAWDRAGM---VARVFQDPMAGTCEALTIEENMALAMARGRRRGFNF 117 G I++ G D+ + + V VFQ LT+E N+ LA+ ++ Sbjct: 59 GDIQVCGHDIHHPDKLNLRELRKQVGIVFQS--YNLFPHLTVERNITLALTTIKKMSTEQ 116 Query: 118 A--IRGKMRELFREKLAILNLGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEH 175 A I K+ +L +GLEN+ LSGGQ Q V++ + ++L DE Sbjct: 117 AKTIAHKVLQL---------VGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEV 167 Query: 176 TAALDPKTAAFVLELTAKIVSEAKLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 T+ALDP+ A VL++ + + +T ++VTH M A D V +HQG+V Sbjct: 168 TSALDPELTAEVLKVMEDL-ARGGMTMVLVTHEMAFARKLADVLVFMHQGQV 218 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 12/211 (5%) Query: 19 NPALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDTGKIEIDGTDVTRKQAW-- 76 N L G+SL + GQ VA+IG +G+GKST L I+G +D G I + G +T K Sbjct: 16 NQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITVAGHKLTHKHEHLI 75 Query: 77 DRAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIRGKMRELFREKLAILNL 136 + V VFQ LT+EEN+ L+ ++ A ++ + + Sbjct: 76 ELRKDVGMVFQH--YNLFPHLTVEENIMLSPRIVKKTATETARETAIK-------VLKQV 126 Query: 137 GLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVS 196 GL+++ LSGGQ+Q V++ + +++L DE T+ALDP+ A VL++ ++ + Sbjct: 127 GLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVMEEL-A 185 Query: 197 EAKLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 +T ++VTH M A D TV +HQG+V Sbjct: 186 RGGMTMLLVTHEMEFARRVADLTVFMHQGKV 216 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 14/210 (6%) Query: 21 ALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDTGKIEIDGTDVTRKQAWDRAG 80 AL +SL P G+ A++G +G GK+T L I+G D+G++ +DG D + + +R Sbjct: 17 ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDASARHVRER-- 74 Query: 81 MVARVFQDPMAGTCEALTIEENMALAMARGRR--RGFNFAIRGKMRELFREKLAILNLGL 138 V VFQ + +T+ EN+A + R R IR K++ L L ++ L Sbjct: 75 QVGFVFQH--YALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL----LELVQL-- 126 Query: 139 ENRLTDRIG-LLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIVSE 197 + L DR LSGGQRQ ++L A R+LLLDE ALD K + ++ E Sbjct: 127 -DWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDE 185 Query: 198 AKLTTMMVTHSMRQALDYGDRTVMLHQGRV 227 +T++ VTH +AL+ D+ V++++G+V Sbjct: 186 LHVTSIFVTHDQEEALEVADQVVLMNKGQV 215 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 11/215 (5%) Query: 21 ALRGLSLEIPTGQFVAVIGSNGAGKSTFLNAISGDLLVDTGKIEIDGTDVT---RKQAWD 77 AL LS +P GQ +A+IG NGAGKST N I+G L D G++ +DG +T ++ W Sbjct: 18 ALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLLDGQSITGLDARRIWR 77 Query: 78 RAGMVARVFQDPMAGTCEALTIEENMALAMARGRRRGFNFAIRGKMRELFREKLAIL--N 135 R V R FQ ++ ++T+ +++ A+ RR + + LFR++ L Sbjct: 78 RG--VGRTFQ--VSAAFSSMTVLQSVQAALLSHHRRLWQ--LWRPADSLFRQQAMELLDQ 131 Query: 136 LGLENRLTDRIGLLSGGQRQAVSLLMASLQPSRILLLDEHTAALDPKTAAFVLELTAKIV 195 +G+ + +L+ G + V L MA R+LL+DE TA + + ++ LT ++V Sbjct: 132 VGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQERQALMALTRRLV 191 Query: 196 SEAKLTTMMVTHSMRQALDYGDRTVMLHQGRVVLD 230 +E + + HSM + DR ++L +G++V D Sbjct: 192 NERGIAVLFTEHSMDVVFAHADRILVLARGQLVAD 226 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 851,856 Number of extensions: 34049 Number of successful extensions: 484 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 132 Length of query: 293 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 209 Effective length of database: 1,222,130 Effective search space: 255425170 Effective search space used: 255425170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)