BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0096.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   171   9e-45
gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   119   4e-29
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...    64   2e-12

>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  171 bits (434), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 85/87 (97%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           MTAQQKMAAF+LNLSSRY SRGYSSTRFQLRMTREEIGN+LGLAVESVSRLLTNFKK+GV
Sbjct: 169 MTAQQKMAAFLLNLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGV 228

Query: 61  IEVNHRDVELCDLPALRAIALGNDPCA 87
           IEVNHRDVELCDLP LRA+ALGNDPCA
Sbjct: 229 IEVNHRDVELCDLPTLRAVALGNDPCA 255


>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  119 bits (299), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 72/86 (83%)

Query: 1   MTAQQKMAAFMLNLSSRYASRGYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGV 60
           M A+Q+ AAF++NLSSRYA+RGYSSTRFQLRMTR+++GN+LGL +ES+SRL++ F+K G+
Sbjct: 184 MRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGL 243

Query: 61  IEVNHRDVELCDLPALRAIALGNDPC 86
           + V  RDVE+ DL AL+ +A G D C
Sbjct: 244 LAVEQRDVEVVDLAALKRLAAGVDAC 269


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 3   AQQKMAAFMLNLSSRYASR-GYSSTRFQLRMTREEIGNHLGLAVESVSRLLTNFKKTGVI 61
           ++Q+ A F+L+LS R +SR G +ST F LRM+R +IG  LGL  ES+SRL++ F+K G+I
Sbjct: 163 SEQRFAFFLLDLS-RISSRCGNASTEFSLRMSRTDIGLFLGLTNESMSRLISKFRKAGLI 221

Query: 62  EVNHRDVELCDLPALRAIALG 82
           +V+ R V +     L  +A G
Sbjct: 222 DVSVRKVRVLSPSTLEELASG 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 219,742
Number of extensions: 6455
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 3
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)