BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0094.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311851|ref|YP_003775943.1| major facilitator superfamily p...   632   0.0  

>gi|300311851|ref|YP_003775943.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/408 (86%), Positives = 368/408 (90%), Gaps = 2/408 (0%)

Query: 6   SADSHGGSRNAAILALCQGLFTCAISIDLTLTALTGWQLAPDKALATLPFALITVAGAVV 65
           SA    G+RNA +LALCQGLFTCAISIDLTLTALTGWQLAPDK+LATLPFALITVAGAVV
Sbjct: 12  SAPDASGARNARVLALCQGLFTCAISIDLTLTALTGWQLAPDKSLATLPFALITVAGAVV 71

Query: 66  TWFAAFLIQRLGRRWSFVLGAASCCVGGLISVWSVWHGQFWFFCVGTALVGVFQAFAQYY 125
           TWFAAFLIQRLGRRWSFVLGAASCCVGGL+SVWSVW G FW FC GTALVGVFQAFAQYY
Sbjct: 72  TWFAAFLIQRLGRRWSFVLGAASCCVGGLVSVWSVWQGHFWSFCAGTALVGVFQAFAQYY 131

Query: 126 RLAAADAVAEAAKSRAISTVLAGGVIAALVGPALAAWSKDWFPAALFAGAYLVVALMGLL 185
           RLAAADAV EAAKSRAI+TVLAGGVIAALVGPALAAWSKDW P ALFAGAYLVVA MGLL
Sbjct: 132 RLAAADAVPEAAKSRAIATVLAGGVIAALVGPALAAWSKDWIPTALFAGAYLVVAAMGLL 191

Query: 186 SVAVLVLFYRDQAEPVAVAQSQSDLASARPLSAIARTPVFMASVANNVAGSMVMMFIMTA 245
           SV  L+LFYRDQ  PVA  +++SD A AR L  I RTPVF+ASVANNVAGSMVMMFIMTA
Sbjct: 192 SVLALLLFYRDQ--PVAAVRTESDGAPARALGQIVRTPVFLASVANNVAGSMVMMFIMTA 249

Query: 246 APLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLIQRFGLGPVLLAGLGMNLGCAVIA 305
           APLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRL+QR GLGPVLLAGL MNLGCAV+A
Sbjct: 250 APLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLVQRVGLGPVLLAGLAMNLGCAVVA 309

Query: 306 MLSTTLRAFYVALLLLGVGWNFMFVGGTTLLAQSYTPSERAKTQGLAELMRYAATALATL 365
           MLSTTL AFY+ALLLLGVGWNFMFVGGTTLLAQSY PSERAKTQG +EL+RYAATALATL
Sbjct: 310 MLSTTLPAFYLALLLLGVGWNFMFVGGTTLLAQSYAPSERAKTQGFSELLRYAATALATL 369

Query: 366 GAGPLLARFGWETLNAAILPVLLVSALVTLRWMWAQRTARTALVAGLR 413
           GAGPLLARFGW+TLN AILPVLL+SAL TL WM  QR A T   AGLR
Sbjct: 370 GAGPLLARFGWQTLNLAILPVLLLSALATLHWMRGQRRAATLPPAGLR 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,211,300
Number of extensions: 48546
Number of successful extensions: 333
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)