BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0093.p
         (69 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311850|ref|YP_003775942.1| AraC family transcription regul...   130   2e-32
gi|300313912|ref|YP_003778004.1| AraC family transcription regul...    60   3e-11
gi|300313081|ref|YP_003777173.1| transcription regulator protein...    54   2e-09
gi|300312798|ref|YP_003776890.1| AraC family transcription regul...    54   2e-09

>gi|300311850|ref|YP_003775942.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  130 bits (327), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 3   AETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQY 62
           AETGRTPARTVELMRLEAARRALEETRLPLKRIASQ+GYGEEQNLRRVFLRQLGVSPGQY
Sbjct: 263 AETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGYGEEQNLRRVFLRQLGVSPGQY 322

Query: 63  RERFAA 68
           RERFAA
Sbjct: 323 RERFAA 328


>gi|300313912|ref|YP_003778004.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 60.1 bits (144), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 46/61 (75%)

Query: 3   AETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQY 62
           +ETG++PA+ +E +RLEAAR  +E++R PL+ +A ++G+ + +++R VFLR  GV+P   
Sbjct: 248 SETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGFGVAPQSM 307

Query: 63  R 63
           R
Sbjct: 308 R 308


>gi|300313081|ref|YP_003777173.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 2   AAETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSP 59
           AAETG+TPAR +E MR EAAR  +E+++  L+ IA  +G+G+   +RR  LR  G  P
Sbjct: 249 AAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACLRLFGQPP 306


>gi|300312798|ref|YP_003776890.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 53.9 bits (128), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 39/64 (60%)

Query: 4   ETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYR 63
           E G+ P + V  +R++ A R LE+T   ++RIA +SG      L RVF + LG++P QYR
Sbjct: 270 EVGKPPGQYVLELRIDHACRHLEKTGWSIERIAERSGLKNADTLHRVFRQHLGMTPAQYR 329

Query: 64  ERFA 67
            R A
Sbjct: 330 ARLA 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 203,443
Number of extensions: 6139
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 5
Length of query: 69
Length of database: 1,619,870
Length adjustment: 41
Effective length of query: 28
Effective length of database: 1,425,735
Effective search space: 39920580
Effective search space used: 39920580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)