BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0092.p (434 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309753|ref|YP_003773845.1| HipA domain-containing protein ... 345 5e-96 gi|300313385|ref|YP_003777477.1| HipA domain-containing protein ... 84 3e-17 gi|300312001|ref|YP_003776093.1| HipA-like protein [Herbaspirill... 64 2e-11 >gi|300309753|ref|YP_003773845.1| HipA domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 455 Score = 345 bits (884), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 206/443 (46%), Positives = 264/443 (59%), Gaps = 14/443 (3%) Query: 2 LHAWMNGELVGTWSVERQVHRFRYAPTWVRSSHFRPLSLSLPL-TASGELRGDSVRNYFD 60 L WMNG VGTW++ Q +Y WV S+ RPLSLSLP + RGD VR+YF+ Sbjct: 12 LGLWMNGSFVGTWALTAQGDSLQYDARWVVSASGRPLSLSLPFRPGNPPHRGDLVRHYFE 71 Query: 61 NLLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCERLD 120 NLLPD+ IRERL +RY+ T+ F LL GRDCVGALQ+LP P+ +I L Sbjct: 72 NLLPDSKAIRERLARRYQAADTDAFALLGEAGRDCVGALQILPLGATPELSWTIDARPLR 131 Query: 121 EAMLEQLLYALPLSSPPASAQEDALRISIAGAQEKTALTWHRGKWCRPLGATPTTHIIKL 180 E + +LL +P A Q + LR+SIAGAQEKTAL + +WC P GATPTTHI+KL Sbjct: 132 EREVAELLRQTMEPTPLALTQGEELRLSIAGAQEKTALLRYLDQWCLPHGATPTTHILKL 191 Query: 181 PLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRVRMK 240 P+GL+GG+ ++D SV NEWLCSRILAA G+PVA + F VLAVERFDR + Sbjct: 192 PMGLVGGL--QLDLRHSVENEWLCSRILAAYGMPVAACDIFCFEDQKVLAVERFDRRWSR 249 Query: 241 E-----GWIARLPQEDFCQAFGLPPTMKYESQGGPGLNQCLGLL-NASSQGGDKTYFLLA 294 + + RLPQED CQA G+ P +KYE+ GGPG+ + + LL A + +F A Sbjct: 250 DPASGQTMLLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPVAARRHFFKA 309 Query: 295 QLAFFLLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPYFGKGPNQFRARQAGPAMLL 354 QL F++L ATDGHAKNFSL L AGGRYE TPLYDVLS++P G+GP + +A AM + Sbjct: 310 QLLFWMLWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLSPHRAAMAMAV 369 Query: 355 RGRNPHRHFHTIEARHWRQLALQHG-----GEPVWQAMLALVQGAEHALAVAEGELADDF 409 R +N HR I RHW L G G+ + L + E +A + +L F Sbjct: 370 RAKNAHRKMKDILPRHWMALGSHFGIVAENGDGPLAILEELAEQTEQVIAKVQADLPPGF 429 Query: 410 PARTWERISEGVRHHQERFLRGV 432 P+ I +G+R L V Sbjct: 430 PSELAASILDGLRRSASSLLSFV 452 >gi|300313385|ref|YP_003777477.1| HipA domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 439 Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 152/376 (40%), Gaps = 60/376 (15%) Query: 16 VERQVHRFRYAPTWVRSSHFRPLSLSLPLTASGELRGDSVRNYFDNLLPDNADIRERLRQ 75 ++ F Y W S+ PLS L+ G + + N+ NL P+ D R + + Sbjct: 23 IQSSDFNFYYYAHWQLSTETFPLSPHFALS-QGRFKSSATANFMMNLFPEG-DARMAIMK 80 Query: 76 RYRLPSTEVFDLLQALGRDCVGALQLL--------PPDQEPQGWRSIHCERLDEAMLEQL 127 RL + VF + G + GA L P Q P + +D+ L + Sbjct: 81 HSRLNADNVFSMAYLFGAEPAGAASFLFHSGTSALPSSQAP------YLREIDDDELSER 134 Query: 128 LYALPLSSPPASAQEDALRISIAGAQEKTALTWHRGKWCRPLGATPTTHIIK-LPLGLIG 186 ++A P A A S+AG Q+K + +H + G+ +THI+K P G Sbjct: 135 IHARHRGVPFAQ-WHGAWHQSLAGVQDKLQVIFHDERLFLAGGSLTSTHILKPEPQG--- 190 Query: 187 GVMQRVDAGDSVYNEWLCSRILAAMGLPVAPARVEHFGRHTVLAVERFDRVR------MK 240 +R V NE C + AA+GL V ++ H VL ++RFDR ++ Sbjct: 191 ---ERTP--HLVANEHFCMSLAAAVGLSVPHVKI-HRAPEAVLLIDRFDRTYAPGTDVLQ 244 Query: 241 EGWIARLPQEDFCQAFGLPPTMKYESQGGP---------GLN-QCLGLLNASSQGGDKTY 290 G + R D CQA LP KYE GG G++ + L L + Sbjct: 245 PGRVERTHIIDGCQALELPSWYKYECLGGHQNRSPERRYGIDFKRLFGLAPHFEDASAAK 304 Query: 291 FLLAQLAFF--LLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSMWPY-----------FG 337 L+ + A F L+ +D H KN S A G P YD++S+ Y FG Sbjct: 305 LLIVRWALFNLLIGNSDAHGKNISFRQTANGIMP-APFYDLVSVQVYGEKVLQEMAMAFG 363 Query: 338 KGPNQFRARQAGPAML 353 +QF A + G A L Sbjct: 364 ---DQFLAEKVGVADL 376 >gi|300312001|ref|YP_003776093.1| HipA-like protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 123/305 (40%), Gaps = 61/305 (20%) Query: 58 YFDNLLPDNADIRERLRQRYRLPSTEVFDLLQALGRDCVGALQLLPPDQEPQGWRSIHCE 117 +F NLLP+ +R+ L QR L + F LL GRD G + S E Sbjct: 80 FFQNLLPEG-QLRKHLVQRAGLAPDDEFGLLAYCGRDLPGDV-------------SASAE 125 Query: 118 RLDEAMLEQLL------YALPLSSPPASAQEDALRISIAGAQEKTALTWHRG-KWCRPLG 170 LDE L +LL Y + P E S++G Q K AL G ++ Sbjct: 126 ELDERGLGRLLGQGHDSYEMSSGQLPVPGGE-----SLSGVQPKLALVREAGGRYVMRSK 180 Query: 171 ATPTTHII-KLPLGLIGGVMQRVDAGDSVYNEWLCSRILAAMGL--------PVAPARVE 221 + +H I KLP D + E+ + AA G+ P++ A E Sbjct: 181 DSHGSHFIAKLP---------ATDYPNMPQVEFSSLTLAAAAGVHTCRFSLEPLS-AIAE 230 Query: 222 H--FGRHT----VLAVERFDRVRMKEGWIARLPQEDFCQAFGLPPTMKYESQGGPGLNQC 275 H FG L V+RFDR RL EDF Q G P KY G Sbjct: 231 HLPFGLRNDASRFLLVQRFDRDAPTP--TGRLHMEDFAQVTGTAPGAKYV-----GSYAA 283 Query: 276 LG--LLNASSQGGDKTYFLLAQLAFF-LLAATDGHAKNFSLHLHAGGRYEMTPLYDVLSM 332 +G LL S++G + Y LL ++ LL D H KNFSL H ++P YD+++ Sbjct: 284 IGVVLLERSTRGVEDVYELLRRIKVNELLGNFDAHLKNFSLLYHTPQAAALSPAYDIVAY 343 Query: 333 WPYFG 337 Y G Sbjct: 344 AAYVG 348 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,529,416 Number of extensions: 67160 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 3 Length of query: 434 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 346 Effective length of database: 1,203,190 Effective search space: 416303740 Effective search space used: 416303740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)