BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0091.p
         (98 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309752|ref|YP_003773844.1| transcription regulator protein...    53   4e-09

>gi|300309752|ref|YP_003773844.1| transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score = 53.1 bits (126), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 2  LNDFPISLSIQLREHLRALRKQRHMTQAQLGERIGISQARIAEIEANPGAVSVEQMLLLL 61
          +++FP+    QL E L+A RKQ  +TQ+++  R+G++Q  ++ +E N   VS E+++ LL
Sbjct: 1  MSEFPVRTGRQLPELLQAYRKQSGLTQSEVARRLGVTQQNLSSLERNADKVSAERLIELL 60

Query: 62 STLGAGLKLH-VHAADKPVHAVGED 85
          + LG  L L  + AA     A   D
Sbjct: 61 NILGVELVLRKIEAAPSDALASPSD 85


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 262,503
Number of extensions: 7550
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 98
Length of database: 1,619,870
Length adjustment: 67
Effective length of query: 31
Effective length of database: 1,302,625
Effective search space: 40381375
Effective search space used: 40381375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)