BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0088.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   538   e-154
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   122   4e-29
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    79   5e-16

>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  538 bits (1385), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/287 (92%), Positives = 270/287 (94%), Gaps = 1/287 (0%)

Query: 1   MSTP-YTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 59
           MSTP YTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF
Sbjct: 3   MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 62

Query: 60  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 119
           PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG
Sbjct: 63  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 122

Query: 120 FQLWVNLAGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEPLY 179
           FQLWVNLAGKDKMT+PGYQDIP+AGIPET PQ GV+VRVLAG+AFG  GAI R TTEPLY
Sbjct: 123 FQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 182

Query: 180 LDLKLEAGVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAAEAGRMAVLSNVAGAAGVT 239
           LDL LEAG TL LPIPATHNAFLYVYEG LAVGAA  ETR AEAGRMAVLSNV G+AGVT
Sbjct: 183 LDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVT 242

Query: 240 VRAEQASRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRAGRF 286
           VRAEQASRFLLIAGKPLNEPI QWGPFVMNTREQVE AIDDFRAGRF
Sbjct: 243 VRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRAGRF 289


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  122 bits (305), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 149/286 (52%), Gaps = 27/286 (9%)

Query: 8   QIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPD-----H 62
            I   ++G+ T+D  G  + R+L     R + PF+  D      P ++ AG  +     H
Sbjct: 3   NIRHKIHGL-TRD-IGFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPH 57

Query: 63  PHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QENGLMS 118
           PH G  TVTY+ +G M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + 
Sbjct: 58  PHIGLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVH 117

Query: 119 GFQLWVNLAGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETTEP- 177
           G Q+WV L    +   P +    +  +P+T    G ++ VLAG+AFGV+  +  +T  P 
Sbjct: 118 GLQMWVALPADQEDGAPLFHHYAADEMPDTV-VGGARLHVLAGSAFGVSSPV--QTASPT 174

Query: 178 LYLDLKLEAGVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAAEAGRMAVLSNVAGAAG 237
           LY+      G TL++       A +YV  G++++     +    EAG +A+L      A 
Sbjct: 175 LYVAGSTTDGATLEIAAEVQERA-VYVVRGEVSL-----DGERLEAGTLAILEP---GAA 225

Query: 238 VTVRAEQASRFLLIAGKPLNEPIAQWGPFVMNTREQVEAAIDDFRA 283
           VT++AE  + F+++ G PL+ P   W  FV  +R+++EAA   + A
Sbjct: 226 VTLQAEGETVFMILGGAPLDGPRFVWWNFVSTSRDKIEAAKQAWNA 271


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 18/177 (10%)

Query: 58  GFPDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLM 117
           GF  H HR  E ++Y+L G + H+D+ GN  ++ PG +Q M+AG G+ HSE    ++G  
Sbjct: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112

Query: 118 SGFQLWV--NLAGKDKMTDPGYQDIPSAGIPETEPQAGVKVRVLAGTAFGVAGAISRETT 175
              Q+W+  + AG     +PGYQ+   +   +       K+R++A +A G  G++S    
Sbjct: 113 HFLQIWIMPDRAG----AEPGYQEAHFSAADKDG-----KLRLVA-SADGRDGSVSMNQD 162

Query: 176 EPLYLDLKLEAGVTLDLPIPATHNAFLYVYEGKLAVGAAGSETRAAEAGRMAVLSNV 232
             LY  L  +   T +  +P     +++V  GK++V       +A EAG    LS V
Sbjct: 163 AQLYAGL-FDGAQTAEYTLPQGRLGYVHVARGKISVNG-----QALEAGDAVKLSAV 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,028,555
Number of extensions: 49090
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)