BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0087.p
         (301 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   531   e-152
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   120   1e-28

>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  531 bits (1369), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 259/292 (88%), Positives = 276/292 (94%)

Query: 10  MSNILHQIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 69
           MSNI H+IHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI
Sbjct: 1   MSNIRHKIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 60

Query: 70  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMASGRGIVHSERIPDDIREQKVPVHGLQ 129
           GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMA+GRGIVHSERIPDDIREQKVPVHGLQ
Sbjct: 61  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ 120

Query: 130 MWVALPAEQEESEPLFRHYASEDMPEAQIGGARLHVLAGSAFGVSSPVATASPTLYVAGS 189
           MWVALPA+QE+  PLF HYA+++MP+  +GGARLHVLAGSAFGVSSPV TASPTLYVAGS
Sbjct: 121 MWVALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTASPTLYVAGS 180

Query: 190 TTQGAELEIAADVQERAVYVVRGDVTLDGERMEPGTLAILAPGAAVALKAVGETVFMILG 249
           TT GA LEIAA+VQERAVYVVRG+V+LDGER+E GTLAIL PGAAV L+A GETVFMILG
Sbjct: 181 TTDGATLEIAAEVQERAVYVVRGEVSLDGERLEAGTLAILEPGAAVTLQAEGETVFMILG 240

Query: 250 GAPLDGPRFVWWNFVATSREKIEAAKLAWNGRDKSVFPDIPGETEWIPLPAH 301
           GAPLDGPRFVWWNFV+TSR+KIEAAK AWN RDKSVFPDIPGE+EWIPLP H
Sbjct: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNARDKSVFPDIPGESEWIPLPTH 292


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 25/265 (9%)

Query: 25  GFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPHPHIGLATVTYLFSGA 81
           G  + R+L     R + PF+  D      P ++ AG  +     HPH G  TVTY+ +G 
Sbjct: 26  GVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPD-----HPHRGFETVTYMLAGR 80

Query: 82  MMHRDSLGVVQRITPGAVNWMASGRGIVHSERIPDDIREQKVPVHGLQMWVALPAEQEES 141
           M HRD+ G    + PG + WM +GRG+VHSE +P+   ++   + G Q+WV L  + + +
Sbjct: 81  MRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QENGLMSGFQLWVNLAGKDKMT 136

Query: 142 EPLFRHYASEDMPEAQIG-GARLHVLAGSAFGVSSPV--ATASPTLYVAGSTTQGAELEI 198
           EP ++   +  +PE     G R+ VLAGSAFG    +  AT  P LY+  +   G  L +
Sbjct: 137 EPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEP-LYLDLALEAGTTLAL 195

Query: 199 AADVQERA-VYVVRGDVTL---DGER--MEPGTLAILA--PGAA-VALKAVGETVFMILG 249
                  A +YV  G + +   DGE    E G +A+L+  PG+A V ++A   + F+++ 
Sbjct: 196 PIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVTVRAEQASRFLLIA 255

Query: 250 GAPLDGPRFVWWNFVATSREKIEAA 274
           G PL+ P   W  FV  +RE++E A
Sbjct: 256 GKPLNEPITQWGPFVMNTREQVEQA 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,094,574
Number of extensions: 49321
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 301
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,217,395
Effective search space: 262957320
Effective search space used: 262957320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)