BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0086.p
         (457 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313385|ref|YP_003777477.1| HipA domain-containing protein ...   191   1e-49
gi|300309753|ref|YP_003773845.1| HipA domain-containing protein ...   116   4e-27

>gi|300313385|ref|YP_003777477.1| HipA domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/420 (33%), Positives = 199/420 (47%), Gaps = 20/420 (4%)

Query: 26  FSLRYDDDWTQSGHALSPALPLIRPEAESRER-HSMEVRNFFQNLLPEGKALDDAVANYH 84
           F+  Y   W  S    +   PL    A S+ R  S    NF  NL PEG A    + +  
Sbjct: 28  FNFYYYAHWQLS----TETFPLSPHFALSQGRFKSSATANFMMNLFPEGDARMAIMKHSR 83

Query: 85  LSKANLAGLLHALGRESAGALVFTANAVTPHDKDERQA--RRLSSEELSQRIRARPEH-P 141
           L+  N+  + +  G E AGA  F  ++ T      +    R +  +ELS+RI AR    P
Sbjct: 84  LNADNVFSMAYLFGAEPAGAASFLFHSGTSALPSSQAPYLREIDDDELSERIHARHRGVP 143

Query: 142 FTVWDGRVRLSIAGYQDKLAVLQQGDAWFLPETLQQSSTHILKPEPVSRQLAGMTTNELM 201
           F  W G    S+AG QDKL V+   +  FL      +STHILKPEP   +   +  NE  
Sbjct: 144 FAQWHGAWHQSLAGVQDKLQVIFHDERLFLAGG-SLTSTHILKPEPQGERTPHLVANEHF 202

Query: 202 CMLLADAVGVRAAAVRLAHVPEPVLVVERFDRVPARGD--MQAAQADGTQVLRRQCIDGC 259
           CM LA AVG+    V++   PE VL+++RFDR  A G   +Q  + + T +     IDGC
Sbjct: 203 CMSLAAAVGLSVPHVKIHRAPEAVLLIDRFDRTYAPGTDVLQPGRVERTHI-----IDGC 257

Query: 260 QALGLPVDFKYERPFGDGDDVKEIRDGASLKRFFRLLGDRDLMHSTGPAKLAFLRWLIFQ 319
           QAL LP  +KYE   G  +   E R G   KR F L            AKL  +RW +F 
Sbjct: 258 QALELPSWYKYECLGGHQNRSPERRYGIDFKRLFGLAPH---FEDASAAKLLIVRWALFN 314

Query: 320 VLIGNTDAHAKNLSFFSDTNRLVLAPAYDMVSGLALIDAQVADQLAMAVGDNFDPRTIRA 379
           +LIGN+DAH KN+SF    N ++ AP YD+VS + +   +V  ++AMA GD F    +  
Sbjct: 315 LLIGNSDAHGKNISFRQTANGIMPAPFYDLVS-VQVYGEKVLQEMAMAFGDQFLAEKVGV 373

Query: 380 FDWALMAHECALAPRLIVNALKELATLSLKKLPDICHEVLAQGGDPRMTQRVASVVQSQC 439
            D A  A    +    ++  L  +A   ++  P +  +      + ++   +A+    Q 
Sbjct: 374 ADLAAFAQVAGIPIEDVMGELTGIAAAVIEMAPALAADACYLDAERKLVANIATYATGQA 433


>gi|300309753|ref|YP_003773845.1| HipA domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 170/369 (46%), Gaps = 46/369 (12%)

Query: 5   LNIWMGGVRVGELWHHTDENLFSLRYDDDW--TQSGHALSPALPLIRPEAESRERHSMEV 62
           L +WM G  VG  W  T +   SL+YD  W  + SG  LS +LP  RP      R  + V
Sbjct: 12  LGLWMNGSFVGT-WALTAQG-DSLQYDARWVVSASGRPLSLSLPF-RP-GNPPHRGDL-V 66

Query: 63  RNFFQNLLPEGKALDDAVAN-YHLSKANLAGLLHALGRESAGALVFTANAVTPHDKDERQ 121
           R++F+NLLP+ KA+ + +A  Y  +  +   LL   GR+  GAL       TP       
Sbjct: 67  RHYFENLLPDSKAIRERLARRYQAADTDAFALLGEAGRDCVGALQILPLGATPELSWTID 126

Query: 122 ARRLSSEELSQRIRARPE-HPFTVWDGR-VRLSIAGYQDKLAVLQQGDAWFLPETLQQSS 179
           AR L   E+++ +R   E  P  +  G  +RLSIAG Q+K A+L+  D W LP      +
Sbjct: 127 ARPLREREVAELLRQTMEPTPLALTQGEELRLSIAGAQEKTALLRYLDQWCLPHG-ATPT 185

Query: 180 THILKPEPVSRQLAG--------MTTNELMCMLLADAVGVRAAAVRL-AHVPEPVLVVER 230
           THILK   +   L G           NE +C  +  A G+  AA  +     + VL VER
Sbjct: 186 THILK---LPMGLVGGLQLDLRHSVENEWLCSRILAAYGMPVAACDIFCFEDQKVLAVER 242

Query: 231 FDRVPARGDMQAAQADGTQVLRRQCIDGCQALGLPVDFKYERPFGDGDDVKEIRDGASLK 290
           FDR  +R D  + Q   T +LR    D CQA G+    KYE    DG        G  +K
Sbjct: 243 FDRRWSR-DPASGQ---TMLLRLPQEDMCQATGISPWLKYE---ADG--------GPGMK 287

Query: 291 RFFRLLGDRDLMHSTGP--AKLAFLRWLIFQVLIGNTDAHAKNLS-FFSDTNRLVLAPAY 347
               LLG      +  P  A+  F +  +   ++  TD HAKN S F     R    P Y
Sbjct: 288 EIMALLGG-----AIDPVAARRHFFKAQLLFWMLWATDGHAKNFSLFLKAGGRYEPTPLY 342

Query: 348 DMVSGLALI 356
           D++S   LI
Sbjct: 343 DVLSVFPLI 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,451,396
Number of extensions: 59958
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,203,190
Effective search space: 443977110
Effective search space used: 443977110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)