BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0081.p (392 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine ... 682 0.0 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 104 1e-23 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 99 8e-22 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 95 1e-20 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 90 3e-19 >gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 468 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/374 (90%), Positives = 356/374 (95%) Query: 1 MLGRSPHVVAGRSLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQI 60 M GR+ HV+AGRSLYTRLV+RVGAVLLVSAA LLIAIWISTQ AAR+AYDRILAGSALQI Sbjct: 1 MQGRTQHVIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQI 60 Query: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQGP 120 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPW ELEQGP Sbjct: 61 AENTWYDHGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGP 120 Query: 121 LLRDGDYLGTPVRMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMS 180 LLRDG YLGTPVRMAIIGRRMPV+ HPWAVIVLAQTNNARMSFAQSLG +ALVVIVAMS Sbjct: 121 LLRDGQYLGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGSRALVVIVAMS 180 Query: 181 ALTILAAMFTLYQALAPLKRIEAAIRERDLNDLSPLSLTVPAETHALVSAINAFMERLVV 240 LT++AAMFTLYQALAPLKRIEAAIRERDLNDLSPL LTVPAETHALVSAINAFM+RL V Sbjct: 181 VLTLVAAMFTLYQALAPLKRIEAAIRERDLNDLSPLVLTVPAETHALVSAINAFMQRLAV 240 Query: 241 HRATMRRVIGDAAHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVNQL 300 HR+TMRRVIGDAAHQLRTPVTALVAQMELLATE +EEKRQRHL LLRERTR+LGALVNQL Sbjct: 241 HRSTMRRVIGDAAHQLRTPVTALVAQMELLATEDNEEKRQRHLTLLRERTRNLGALVNQL 300 Query: 301 INHAMVQHRNDSRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIAL 360 INHAMVQHRNDS LQ RIDL +LVRSQMTEVLSNR+RTPHDL+LDVPPLPCLI+GD I+L Sbjct: 301 INHAMVQHRNDSSLQARIDLGELVRSQMTEVLSNRSRTPHDLSLDVPPLPCLIRGDAISL 360 Query: 361 GEAIKNILDNALQY 374 GEAIKNILDNALQY Sbjct: 361 GEAIKNILDNALQY 374 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 99/381 (25%), Positives = 172/381 (45%), Gaps = 17/381 (4%) Query: 7 HVVAGRSLYTRLVVRVGAVLLVSAAVLLIAIWISTQLAARQAYDRILAGSALQIAENTWY 66 H R L L+ + V L+ A + W L A+ A+D+ L S + + Sbjct: 5 HSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAW----LPAQHAFDQNLMDSTWGLYAQVRH 60 Query: 67 DHGEVNVDVPLAALSMLGTG--DHAIYAVFDPRGRVIAGDAEFRPEIPWNELEQGPLLRD 124 ++ A +L + D +AV + G+++ GD F P++P +++ P+ D Sbjct: 61 RQERTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGF-PQLPASDVFDRPINYD 119 Query: 125 GDYLGTPVRMAIIGRRMPVDSAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMSALTI 184 G+ G PVR+A + R V + W + +A+T R ++ LV+ A++ +I Sbjct: 120 GEMRGEPVRIAAMQVR--VKNGVIW--VAVAETIRKRDRAHYTILLSFLVLDGALTFASI 175 Query: 185 LAAMFTLYQALAPLKRIEAAIRERDLNDLSPL-SLTVPAETHALVSAINAFMERLVVHRA 243 + + + L PLK ++ + +RD L + P E L+ A+N M R+ Sbjct: 176 FVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQ 235 Query: 244 TMRRVIGDAAHQLRTPVTALVAQMELLATEPSEE-KRQRHLALLRERTRHLGALVNQLIN 302 + + D AHQLRTP+T L Q+ELL + ++ R LA++ + QL+ Sbjct: 236 AQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLA 295 Query: 303 HAMVQ-HRNDSRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIALG 361 A + +SR E + L LV + + + DL D+ P ++GD L Sbjct: 296 LARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLR--PARLRGDRFLLS 353 Query: 362 EAIKNILDNALQY-PRRGCCT 381 + I N++DNA++Y P G T Sbjct: 354 DLIDNLIDNAVRYSPPHGTVT 374 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 167/356 (46%), Gaps = 20/356 (5%) Query: 35 IAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDVPLAALSMLGTGDHA---IY 91 +++ +T + AYDR+L S I + ++GE+ +P AAL + D++ IY Sbjct: 32 FSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGELKASLPYAALEIY-EADYSSRMIY 90 Query: 92 AVFDPRGRVIAGDAEFRPEIPWNELEQG--PLL---RDGDYLGTPVRMAIIGRRMPVDSA 146 + G+ GDA+ P ++ P L + Y G PVR+A + + + + Sbjct: 91 RINGLDGKFFDGDADL-PSYKGKADKEAIYPALAHIYEDTYNGVPVRVAALFQPVVTNDP 149 Query: 147 HPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMSALTILAAMFTLYQALAPLKRIEAAIR 206 A++ +A+T R + A+ + + L+ A+ + + ++ + +AL P+ + + Sbjct: 150 RGAALVQVAETMENRSALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLD 209 Query: 207 ERDLNDLSPLSLTV-PAETHALVSAINAFMERLVVHRATMRRVIGDAAHQLRTPVTALVA 265 ER +DLSP++ + P E + A+N M RL +R + +A+HQLRTP+ L Sbjct: 210 ERPADDLSPVAPPMAPRELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKT 269 Query: 266 QME--LLATEPSEEKRQRHLALLRERTRHLGALVNQLINHAMVQHRNDSRLQERIDLADL 323 Q++ L P+ Q + T L NQL++ A V+ QE DL L Sbjct: 270 QLQSGLRGDAPAPVIWQEMSGTVERAT----TLANQLLSLAKVEQIRGRGAQEVCDLGML 325 Query: 324 VRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIALGEAIKNILDNALQY-PRRG 378 R ++ A D L+ + L+ G P +GE I N+L NA+++ P +G Sbjct: 326 ARETAVDLSPLIAEKDLDFELEAEKI--LVMGHPWMIGELISNLLHNAIRHTPAQG 379 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 2/188 (1%) Query: 189 FTLYQALAPLKRIEAAIRERDLNDLSPL-SLTVPAETHALVSAINAFMERLVVHRATMRR 247 F L + L+PL ++ IR R +DLSP+ S VP E LV ++N + RL A +R Sbjct: 92 FALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKR 151 Query: 248 VIGDAAHQLRTPVTALVAQMELLATEPSEEKRQRHLALLRERTRHLGALVNQLINHAMVQ 307 I DAAHQ++TP+ + Q EL + + +R L L + + LVNQL++ A + Sbjct: 152 FIADAAHQMKTPLAGMRMQSELALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAE 211 Query: 308 H-RNDSRLQERIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIALGEAIKN 366 + ++ S ++L +L RS + + + DL + P P LI G+P+ L E + N Sbjct: 212 NQQSQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSN 271 Query: 367 ILDNALQY 374 +LDNAL Y Sbjct: 272 LLDNALHY 279 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 155/374 (41%), Gaps = 18/374 (4%) Query: 31 AVLLIAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDVPLAALSMLGTGD--H 88 AV ++++ + A AYDR L S +AE G V DVP AL T + Sbjct: 28 AVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVTADVPYVALDSFETDNLGR 87 Query: 89 AIYAVFDPRGRVIAGDAEFRPEIP-WNELEQGPLL---RDGDYLGTPVRMAIIGRRMPVD 144 Y V G +++G + P P E P L DY PVR+A + + + D Sbjct: 88 IYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQADYHDQPVRIAALLQPVYDD 147 Query: 145 SAHPWAVIVLAQTNNARMSFAQSLGGKALVVIVAMSALTILAAMFTLYQALAPLKRIEAA 204 S A+I + +T R + + L + + L F + L PL +++ Sbjct: 148 SIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALLVWFAVRFVLRPLMQLKGE 207 Query: 205 IRERDLNDLSPLSLT-VPAETHALVSAINAFMERLVVHRATMRRVIGDAAHQLRTPVTAL 263 + R DLS V E LV A+N +M RL + RR I DA+HQLRTP+T L Sbjct: 208 VESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQRRFIADASHQLRTPLTVL 267 Query: 264 VAQMELLATEPSEEKRQRHLALLRERTRHLGA-------LVNQLINHAMVQHRNDSRLQE 316 Q EL E E Q A LR+ + L N+L+ A +H Sbjct: 268 KTQSELTLRELRRE--QVDAAELRDLVEGMARTTDAAVHLANRLLTLARAEHGAAEGGTM 325 Query: 317 RIDLADLVRSQMTEVLSNRARTPHDLALDVPPLPCLIQGDPIALGEAIKNILDNALQY-P 375 + L+D R E+ LA + I+ + + L E + N+LDNA++Y P Sbjct: 326 PLSLSDAARQVALELSQQAVSREIGLAFEEEG-DVSIEANALLLHELMVNLLDNAIRYTP 384 Query: 376 RRGCCTYDWTAMAS 389 G T A +S Sbjct: 385 AGGHVTLRVRAQSS 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,165,652 Number of extensions: 48924 Number of successful extensions: 246 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 236 Number of HSP's successfully gapped: 11 Length of query: 392 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 305 Effective length of database: 1,207,925 Effective search space: 368417125 Effective search space used: 368417125 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)