BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0080.p (186 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 335 2e-93 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 146 1e-36 gi|300313818|ref|YP_003777910.1| two component transcription reg... 143 1e-35 gi|300309981|ref|YP_003774073.1| two component response regulato... 142 2e-35 gi|300312680|ref|YP_003776772.1| two component response regulato... 139 1e-34 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 335 bits (858), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 165/182 (90%), Positives = 170/182 (93%) Query: 1 MLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARI 60 MLPQ DGFSLL+QLR RG HTPVLMLTAC E+EERVRALDLGADDYLVKPFDFRELDARI Sbjct: 52 MLPQQDGFSLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARI 111 Query: 61 RVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKD 120 RVLLRRSGGESTNLLHCANL IDRKSR+ATLDGQPIELTRREVTLLEIIAARPGRIFNKD Sbjct: 112 RVLLRRSGGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKD 171 Query: 121 ELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAAGEASAST 180 ELMDRLFTVDD P+AN+VEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPA A A T Sbjct: 172 ELMDRLFTVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGT 231 Query: 181 PA 182 A Sbjct: 232 AA 233 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/166 (45%), Positives = 106/166 (63%) Query: 1 MLPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARI 60 MLP+ G ++L +LR R PV++LTA G I+E+V L GADDYLVKPF+ REL ARI Sbjct: 53 MLPKLHGKNVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARI 112 Query: 61 RVLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKD 120 +VL+RR + +HC NL D +R + G + L RE +LE++ R G+ +K Sbjct: 113 KVLVRRQTPDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKT 172 Query: 121 ELMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 166 LM +F++ + P+A+ +E Y++RLRKKL + I TLRGLGY L Sbjct: 173 ALMKGVFSLSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLL 218 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/168 (45%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP+ DG +L+++RARG TPVL+LTA G + +RV L++GADDYL KPF+ EL+AR++ Sbjct: 54 LPRMDGMEVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVK 113 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 LLRRS + C L D SRT T G+ + LT RE +LE + R G K++ Sbjct: 114 ALLRRSQNNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEK 173 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKL---AAAAFEIRTLRGLGYQL 166 L ++FT++D + + +E Y+ RLRKKL I TLRGLGY L Sbjct: 174 LFQQVFTLEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLL 221 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/165 (44%), Positives = 102/165 (61%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP+ G +L +LRAR PVL+LTA +E+RV+ LDLGADDY+ KPF EL+AR+R Sbjct: 54 LPKMSGLEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVR 113 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 L RR G ++ L D+ R A + Q +EL+ RE+ LLE++ R GR+ +K++ Sbjct: 114 ALTRRGAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQ 173 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 166 L+D L + + N +E YV RLRKK+ I T+RGLGY L Sbjct: 174 LVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 104/165 (63%), Gaps = 1/165 (0%) Query: 2 LPQTDGFSLLEQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELDARIR 61 LP DGF +L ++RA G +TPVL+LTA I +RV L+LGADDYLVKPF EL ARI+ Sbjct: 52 LPGIDGFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIK 111 Query: 62 VLLRRSGGESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDE 121 L+RRS + L L +D ++ A +DG+ IEL+ RE T+LE + R+ +K + Sbjct: 112 ALIRRSAPQPAQ-LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQ 170 Query: 122 LMDRLFTVDDTPNANTVEQYVARLRKKLAAAAFEIRTLRGLGYQL 166 ++D + + N VE YV+R+R K+A + IRT+RG GY L Sbjct: 171 IIDAVLPWGEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYML 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 474,782 Number of extensions: 17693 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 24 Length of query: 186 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 106 Effective length of database: 1,241,070 Effective search space: 131553420 Effective search space used: 131553420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)